# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	8.03e-08		
2dfzA	381	9.938		
2i79A	172	14.83		
1tqzA	133	17.55	b.55.1.11	119327
2fa1A	160	19.90	d.190.1.2	133182
1t4nA	94	25.84	d.50.1.1	106424
2f20A	240	29.41	d.303.1.1	132791
2rp4A	76	35.96		
1k3xA	262	38.36	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2yhx	457	39.14		
2pstX	74	56.00		
1ursA	402	57.02	c.94.1.1	99833
1ytvA	366	60.19	c.94.1.1	124016
1r2zA	274	62.99	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1t92A	116	68.28	d.24.1.3	112326
1k8kD	300	72.07	d.198.2.1,d.198.2.1	68309,68310
2d4qA	257	73.70		
2zdiC	151	76.40		
2p86A	215	76.98		
1wgoA	123	78.91	b.1.3.1	114618
2b9kA	47	79.30		
1wxcB	134	84.62		
1jpzA	473	88.09	a.104.1.1	67069
1yrcA	414	89.00	a.104.1.1	123917