# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.10e-08		
2dfzA	381	6.600		
1t92A	116	17.43	d.24.1.3	112326
2gj2A	85	19.51		
1tqzA	133	22.91	b.55.1.11	119327
2q22A	139	37.11		
1t4nA	94	38.48	d.50.1.1	106424
2d4qA	257	40.55		
1y3nA	490	41.44	c.94.1.1	122597
1atzA	189	41.89	c.62.1.1	34132
2zdrA	349	43.94		
2f20A	240	44.90	d.303.1.1	132791
1ursA	402	46.21	c.94.1.1	99833
1ytvA	366	46.28	c.94.1.1	124016
2fa1A	160	52.14	d.190.1.2	133182
2ghaA	382	55.07		
3c2eA	294	58.33		
1v7pC	200	64.29	c.62.1.1	108408
1zn6A	227	73.93	d.303.1.1	125373
2zdiC	151	78.94		
2r6gF	514	80.17		
2p36A	335	86.45