# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.30e-10		
2i79A	172	4.856		
2dfzA	381	6.794		
2fa1A	160	11.69	d.190.1.2	133182
1k3xA	262	11.72	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1tqzA	133	15.11	b.55.1.11	119327
2yhx	457	16.05		
1t4nA	94	17.98	d.50.1.1	106424
1acf	125	18.87		
1iwmA	186	20.51	b.125.1.2	83758
2rp4A	76	22.91		
2d4qA	257	23.21		
1r2zA	274	29.97	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
2f20A	240	30.20	d.303.1.1	132791
1k8kD	300	32.88	d.198.2.1,d.198.2.1	68309,68310
2fcwB	80	36.20	g.12.1.1,g.12.1.1	133289,133290
1yk3A	210	37.35	d.108.1.1	123493
1r6lA	239	38.49	d.14.1.4,d.101.1.1	97153,97154
1r17A	343	44.53	b.2.3.4,b.2.3.4	96796,96797
2j05A	65	45.68		
1wxcB	134	47.89		
1t92A	116	48.56	d.24.1.3	112326
1ee8A	266	52.45	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
2b9kA	47	53.64		
2r6gF	514	55.35		
2fafA	608	55.36		
1tl9A	339	56.73	d.3.1.3	112505
1ursA	402	60.97	c.94.1.1	99833
1n71A	180	64.07	d.108.1.1	85370
2atrA	138	64.30	d.108.1.1	127305
2yhxA	457	66.39	i.12.1.1	46024
1y7rA	133	68.21	d.108.1.1	122716
1acfA	125	68.58	d.110.1.1	40882
2ooiA	162	69.18		
1ytvA	366	69.71	c.94.1.1	124016
1whoA	96	71.44	b.7.3.1	23215
2ci9A	102	72.38		
2pstX	74	72.92		
2bz6L	53	73.67	g.3.11.1	129553
2v82A	212	74.45		
1uerA	191	75.74	a.2.11.1,d.44.1.1	107790,107791
2hdvA	111	76.41		
2i7fA	108	76.95		
1mngA	203	83.39	a.2.11.1,d.44.1.1	15776,38701
1r1qA	100	83.82	d.93.1.1	104763
2nybA	192	85.09	a.2.11.1,d.44.1.1	138804,138805
2awpA	198	86.62		
1iscA	192	87.09	a.2.11.1,d.44.1.1	15733,38726
2ghaA	382	87.10