# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bidA 64 3.78e-12 2gj2A 85 2.991 2o8jA 281 4.200 2pz4A 239 5.001 1jbwA 428 5.654 c.59.1.2,c.72.2.2 62860,62861 1itvA 195 5.729 b.66.1.1 76791 1t92A 116 5.924 d.24.1.3 112326 1ji1A 637 6.118 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 2vccA 891 6.526 2yhx 457 6.598 2ghaA 382 7.050 2po1B 277 7.226 2ap1A 327 7.609 c.55.1.10,c.55.1.10 127108,127109 2fcwB 80 7.756 g.12.1.1,g.12.1.1 133289,133290 2qg7A 458 9.454 2pgbB 259 9.626 1yalA 218 9.792 d.3.1.1 37025 1uh4A 637 9.813 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 2i79A 172 10.38 1lopA 164 11.43 b.62.1.1 27510 1v9tA 166 12.39 b.62.1.1 108451 1whoA 96 13.20 b.7.3.1 23215 1ksiA 642 15.31 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1txnA 328 15.60 d.248.1.1 112779 2heuA 401 16.36 1fs0E 138 17.81 a.2.10.1,b.93.1.1 59997,59998 1v7pC 200 19.47 c.62.1.1 108408 2a2nA 176 20.16 b.62.1.1 126041 1j6wA 175 20.24 d.185.1.2 62663 1z9tA 255 20.46 2v8hA 474 21.78 1zgdA 312 22.27 1zkcA 197 23.02 b.62.1.1 125182 2nykA 285 23.21 2hv2A 400 23.72 2bllA 345 23.87 c.2.1.2 128733 2q4mA 217 25.73 d.23.1.2 139870 2akaB 299 26.26 c.37.1.8 126914 1ms9A 648 27.33 b.29.1.15,b.68.1.1 85088,85089 1tqzA 133 27.37 b.55.1.11 119327 1j7jA 178 27.74 c.61.1.1 84131 1t4nA 94 28.79 d.50.1.1 106424 2dt4A 143 29.28 1vr3A 191 31.28 b.82.1.6 120431 2yhxA 457 31.60 i.12.1.1 46024 2zdiC 151 32.69 1oaoC 729 32.96 e.26.1.3 86746 1qfxA 460 34.11 c.60.1.2 33994 2ozpA 345 36.38 2zceA 291 36.84 1vjfA 180 39.22 d.116.1.1 100809 3b7nA 320 39.63 1n71A 180 39.81 d.108.1.1 85370 1ursA 402 42.29 c.94.1.1 99833 1tdzA 272 42.83 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1rlr 761 42.86 1ydnA 295 43.88 2glfA 450 43.89 1zk5A 176 44.01 1yd0A 96 44.15 1z2lA 423 44.34 c.56.5.4,d.58.19.1 124383,124384 1gz8A 299 44.70 d.144.1.7 83405 1sw2A 275 45.18 c.94.1.1 106064 1rz2A 254 45.51 b.100.1.1 105130 2gupA 292 45.62 c.55.1.10,c.55.1.10 135744,135745 1iwmA 186 47.50 b.125.1.2 83758 1p7hL 286 47.77 b.1.18.1,b.2.5.3 94271,94272 1h2wA 710 48.85 b.69.7.1,c.69.1.4 76596,76597 2yx1A 336 50.65 2hdvA 111 51.67 1nr0A 611 51.87 b.69.4.1,b.69.4.1 86078,86079 1wdcB 156 51.89 a.39.1.5 17302 1omrA 201 52.03 a.39.1.5 93349 1lniA 96 52.32 d.1.1.2 74046 1g8mA 593 52.57 c.24.1.3,c.97.1.4 60371,60372 2pvuA 272 53.78 1uv4A 293 55.97 b.67.2.1 119705 1r1qA 100 60.55 d.93.1.1 104763 2bhvA 246 61.09 2rp4A 76 61.24 3bbjA 272 62.41 2b0tA 738 62.45 2cw6A 298 63.48 1anf 370 64.05 1pieA 419 65.39 d.14.1.5,d.58.26.7 94706,94707 1s1pA 331 65.87 c.1.7.1 98350 2p86A 215 66.47 2hxdA 204 67.13 2q4kA 251 67.17 d.86.1.2 139864 1r6lA 239 67.46 d.14.1.4,d.101.1.1 97153,97154 2z30A 320 68.45 1v33A 366 69.28 d.264.1.1 100278 1yvkA 163 69.73 d.108.1.1 124101 1yrcA 414 70.43 a.104.1.1 123917 3bk5A 237 70.67 1djxA 624 70.83 a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1p3dA 475 71.06 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1wxcB 134 71.16 1q2bA 434 72.18 b.29.1.10 95624 1n0uA 842 72.37 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 2rckA 225 72.88 2o2zA 323 73.45 2d4qA 257 73.47 1ffyA 917 74.04 a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1kuxA 207 74.20 d.108.1.1 73021 2je6A 277 74.80 2b9kA 47 75.41 1tdhA 364 75.59 a.156.1.2,b.113.1.1,g.39.1.8 106772,106773,106774 2g1lA 104 75.87 b.26.1.2 134520 2hoeA 380 75.96 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2qjjA 402 76.00 2pstX 74 76.25 1e58A 249 77.62 c.60.1.1 59262 2cirA 297 78.33 1riiA 265 78.77 c.60.1.1 111807 1vf8A 377 80.29 c.1.8.5,d.26.3.1 120029,120030 2qkpA 151 80.56 2ppeA 343 81.89 2o9cA 342 83.30 2ahfA 377 83.65 1pjrA 724 83.81 c.37.1.19,c.37.1.19 32391,32392 1qpcA 279 85.68 d.144.1.7 41685 1acf 125 85.90 2icyA 469 89.38 b.81.1.4,c.68.1.5 137257,137258 1f00I 282 89.58 b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 3bqcA 335 89.93