# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.29e-09		
2dfzA	381	6.619		
2i79A	172	9.334		
1k3xA	262	12.46	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2yhx	457	21.41		
2fa1A	160	25.73	d.190.1.2	133182
1tqzA	133	26.83	b.55.1.11	119327
2f20A	240	28.35	d.303.1.1	132791
1t4nA	94	31.61	d.50.1.1	106424
1ursA	402	34.85	c.94.1.1	99833
2rp4A	76	36.90		
1r2zA	274	38.99	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1ytvA	366	39.11	c.94.1.1	124016
2b9kA	47	50.21		
1t92A	116	50.42	d.24.1.3	112326
1r6lA	239	50.81	d.14.1.4,d.101.1.1	97153,97154
2icuA	229	52.13		
2ghaA	382	54.12		
1wxcB	134	61.20		
1ee8A	266	62.16	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
2v82A	212	64.16		
2j05A	65	65.50		
2d4qA	257	67.33		
1iwmA	186	67.88	b.125.1.2	83758
2pstX	74	69.09		
2fafA	608	69.66		
2p86A	215	70.31		
1k8kD	300	71.78	d.198.2.1,d.198.2.1	68309,68310
1wgoA	123	72.14	b.1.3.1	114618
1tdzA	272	75.23	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1yk3A	210	76.45	d.108.1.1	123493
2yrlA	102	78.02		
2yhxA	457	81.34	i.12.1.1	46024
1h6fA	193	84.11	b.2.5.4	70901
2q4kA	251	84.73	d.86.1.2	139864
1whoA	96	85.67	b.7.3.1	23215