# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	8.61e-10		
2dfzA	381	6.186		
2rp4A	76	10.14		
1tqzA	133	13.10	b.55.1.11	119327
2fa1A	160	15.90	d.190.1.2	133182
1ursA	402	15.96	c.94.1.1	99833
1t4nA	94	17.33	d.50.1.1	106424
1ytvA	366	19.29	c.94.1.1	124016
2i79A	172	22.76		
2ghaA	382	24.10		
1h6fA	193	35.16	b.2.5.4	70901
1wgoA	123	36.15	b.1.3.1	114618
2yhx	457	36.64		
2b9kA	47	39.53		
1r6lA	239	39.54	d.14.1.4,d.101.1.1	97153,97154
2atrA	138	39.97	d.108.1.1	127305
1y7rA	133	45.21	d.108.1.1	122716
2f20A	240	54.28	d.303.1.1	132791
2d4qA	257	60.50		
2qa9E	185	61.76		
1k3xA	262	63.33	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2zdiC	151	64.15		
2icuA	229	64.24		
1t92A	116	66.51	d.24.1.3	112326
1wxcB	134	68.02		
2q22A	139	69.35		
2pstX	74	73.77		
2yrlA	102	76.44		
1acf	125	77.24		
1k8kD	300	80.52	d.198.2.1,d.198.2.1	68309,68310
2bz6L	53	82.78	g.3.11.1	129553
2yhxA	457	84.39	i.12.1.1	46024
2b34A	199	87.70		
2fncA	381	87.99