# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	4.58e-09		
2dfzA	381	9.900		
2rp4A	76	10.20		
1tqzA	133	12.53	b.55.1.11	119327
2i79A	172	12.72		
2fa1A	160	17.18	d.190.1.2	133182
2yhx	457	20.90		
1ursA	402	26.09	c.94.1.1	99833
1t92A	116	34.98	d.24.1.3	112326
2f20A	240	35.57	d.303.1.1	132791
1h6fA	193	39.15	b.2.5.4	70901
2b9kA	47	42.41		
2atrA	138	46.39	d.108.1.1	127305
1k3xA	262	49.39	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2icuA	229	53.08		
1t4nA	94	59.40	d.50.1.1	106424
2yhxA	457	59.56	i.12.1.1	46024
1ytvA	366	64.60	c.94.1.1	124016
1wgoA	123	65.87	b.1.3.1	114618
1r6lA	239	66.35	d.14.1.4,d.101.1.1	97153,97154
1y7rA	133	67.73	d.108.1.1	122716
2fcwB	80	68.77	g.12.1.1,g.12.1.1	133289,133290
2pstX	74	69.89		
1k8kD	300	70.16	d.198.2.1,d.198.2.1	68309,68310
2d4qA	257	75.29		
1tl9A	339	78.39	d.3.1.3	112505
1r17A	343	81.18	b.2.3.4,b.2.3.4	96796,96797
1wxcB	134	82.39		
2ghaA	382	82.70		
1tdhA	364	83.42	a.156.1.2,b.113.1.1,g.39.1.8	106772,106773,106774
1ee8A	266	87.10	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825