# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.30e-08		
2dfzA	381	9.703		
1tqzA	133	17.76	b.55.1.11	119327
2fa1A	160	20.46	d.190.1.2	133182
2rp4A	76	23.46		
2i79A	172	23.64		
1h6fA	193	26.28	b.2.5.4	70901
2b9kA	47	31.69		
1t92A	116	32.24	d.24.1.3	112326
2yhx	457	33.90		
2f20A	240	35.37	d.303.1.1	132791
1ursA	402	35.51	c.94.1.1	99833
2bz6L	53	40.14	g.3.11.1	129553
1r6lA	239	41.80	d.14.1.4,d.101.1.1	97153,97154
1wxcB	134	46.83		
1t4nA	94	46.92	d.50.1.1	106424
1ytvA	366	73.46	c.94.1.1	124016
1wgoA	123	74.77	b.1.3.1	114618
2yhxA	457	83.43	i.12.1.1	46024
1k3xA	262	83.82	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2v82A	212	84.79		
2pr3B	51	85.19		
2ghaA	382	87.99		
2icuA	229	88.62		
2bokL	55	88.71	g.3.11.1	128917
2d4qA	257	89.03