# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	3.65e-08		
1fhoA	119	11.66	b.55.1.1	26982
1t4nA	94	16.81	d.50.1.1	106424
1i1nA	226	17.32	c.66.1.7	71102
2pz4A	239	19.58		
2jm1A	141	21.14		
2fa1A	160	22.44	d.190.1.2	133182
2i79A	172	24.50		
2dfzA	381	26.18		
2gj2A	85	28.88		
4tsvA	150	39.32	b.22.1.1	23860
2k0mA	104	40.51		
1wgoA	123	40.89	b.1.3.1	114618
2d4qA	257	41.82		
1ftrA	296	44.89	d.58.33.1,d.58.33.1	39485,39486
2nnrA	110	46.25		
2q22A	139	49.33		
2j59M	168	49.38		
1t92A	116	54.00	d.24.1.3	112326
2qa9E	185	58.73		
2rckA	225	60.78		
1e6uA	321	60.81	c.2.1.2	29805
1wwhA	119	60.85	d.58.7.1	121358
2yhx	457	60.94		
1yy6A	155	63.03		
1lvaA	258	72.58	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2v82A	212	81.39		
1l2mA	118	82.26	d.89.1.4	77657
2p36A	335	82.80		
1plc	99	87.51