# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.68e-07		
2i79A	172	21.09		
1t4nA	94	31.73	d.50.1.1	106424
2dfzA	381	32.39		
2gj2A	85	33.43		
2fa1A	160	34.60	d.190.1.2	133182
1ursA	402	41.16	c.94.1.1	99833
2yhx	457	41.82		
2k0mA	104	50.82		
1k8kD	300	54.23	d.198.2.1,d.198.2.1	68309,68310
1wgoA	123	55.42	b.1.3.1	114618
2q18X	293	55.93		
2zdrA	349	58.14		
2j59M	168	58.58		
1n71A	180	60.94	d.108.1.1	85370
1vjuA	309	61.68	d.248.1.1	100835
1qwoA	442	62.17	c.60.1.2	104620
1vm9A	111	65.74	b.33.1.1	108886
1k3xA	262	73.01	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1dkqA	410	85.77	c.60.1.2	33998
1ftrA	296	87.62	d.58.33.1,d.58.33.1	39485,39486