# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bidA 64 0.000454 2fh5A 185 2.518 d.110.4.4 133477 1u69A 163 4.478 d.32.1.7 107699 1nkiA 135 5.672 d.32.1.2 91941 1jkeA 145 7.182 c.110.1.1 66791 2qedA 258 9.437 1j7gA 144 10.51 c.110.1.1 84130 1mp9A 198 10.79 d.129.1.1,d.129.1.1 91385,91386 1ecsA 126 11.14 d.32.1.2 59407 1zosA 230 11.77 2rbbA 141 18.74 2qmwA 267 19.45 1tibA 269 21.66 c.69.1.17 34738 2z0rA 103 23.73 3tglA 269 24.89 c.69.1.17 34733 1tib 269 25.53 1kllA 130 27.24 d.32.1.2 72720 1xrkA 124 29.85 d.32.1.2 115881 1t4nA 94 29.89 d.50.1.1 106424 1qh5A 260 30.32 d.157.1.2 42057 1xqaA 113 31.64 d.32.1.2 115837 1u7iA 136 33.31 d.32.1.7 107724 1fa8A 135 34.12 d.32.1.1 38486 1mqoA 227 34.21 d.157.1.1 103846 2obwA 258 35.46 1jj2H 167 35.88 d.41.4.1 63093 1bjtA 793 38.29 e.11.1.1 43249 1bjt 793 38.76 1qtoA 122 39.51 d.32.1.2 38494 1lfpA 249 39.74 e.39.1.1 73885 2c21A 144 40.13 d.32.1.1 129649 1qjcA 158 41.63 c.26.1.3 63328 1f1uA 323 43.53 d.32.1.3,d.32.1.3 83200,83201 2ci1A 275 43.56 1a7tA 232 45.06 d.157.1.1 42041 2fhxA 246 46.27 2pjsA 119 46.93 1x8hA 228 47.59 d.157.1.1 114961 2v2gA 233 49.80 2qcuA 501 50.52 1whsB 153 50.73 1kzfA 230 50.76 d.108.1.3 73354 2ab5A 269 53.54 2j01Q 141 54.26 2r3aA 300 54.28 2hv2A 400 56.54 2qdsA 227 56.86 2as0A 396 57.37 b.122.1.9,c.66.1.51 127227,127228 1jysA 242 57.91 c.56.2.1 77216 1wnaA 131 58.52 d.319.1.1 121091 1vm9A 111 59.18 b.33.1.1 108886 2yr1A 257 61.03 1qqgA 264 62.11 b.55.1.2,b.55.1.2 26987,26988 1srvA 145 62.15 c.8.5.1 30817 1u9yA 284 62.18 c.61.1.2,c.61.1.2 119655,119656 2gcuA 245 65.77 2igiA 180 65.86 1mw7A 240 66.39 e.39.1.1 79557 3bqxA 150 66.41 2a4xA 138 68.37 d.32.1.2 126166 1s28A 132 71.13 d.198.1.1 105223 1fhoA 119 72.68 b.55.1.1 26982 1t4oA 117 72.82 d.50.1.1 106425 1st9A 143 73.32 c.47.1.10 98987 1wmhA 89 73.60 d.15.2.2 114744 1f1xA 322 74.86 d.32.1.3,d.32.1.3 83208,83209 2q3uA 383 74.86 d.126.1.6 139809 1r9cA 139 75.25 d.32.1.2 97255 1u5fA 148 75.38 b.55.1.1 119542 2b78A 385 76.89 b.122.1.9,c.66.1.51 128025,128026 1ml9A 302 77.26 b.85.7.1 79282 1th8A 145 79.10 d.122.1.3 106908 2nrqA 159 79.61 2nykA 285 81.51 3bjuA 521 81.84 1x8gA 227 82.12 d.157.1.1 114960 2i00A 406 82.42 1fjgK 129 82.63 c.55.4.1 33733 1pytA 94 83.01 d.58.3.1 39064 2pziA 681 83.38 2gj2A 85 84.89 1qnaA 200 84.90 d.129.1.1,d.129.1.1 41226,41227 1v5iB 76 85.26 1stzA 338 86.02 a.4.5.51,d.110.2.3 106009,106010 2ph3A 245 86.85 1u6lA 149 89.33 d.32.1.7 113067