# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	7.40e-09		
1p3dA	475	12.42	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2rghA	571	12.45		
1t4nA	94	19.87	d.50.1.1	106424
1tqzA	133	24.51	b.55.1.11	119327
2f20A	240	26.36	d.303.1.1	132791
2ghaA	382	32.04		
2zdiC	151	34.66		
1kwmA	402	36.66	c.56.5.1,d.58.3.1	73079,73080
1h9oA	112	41.65	d.93.1.1	60837
2gz6A	388	41.94		
2qr7A	342	43.64		
1jbwA	428	45.21	c.59.1.2,c.72.2.2	62860,62861
1ijbA	202	47.31	c.62.1.1	71229
2a8eA	220	47.84	d.296.1.1	126397
1fnsA	196	48.13	c.62.1.1	34136
1gg1A	350	48.33	c.1.10.4	29187
1eqfA	280	53.92	a.29.2.1,a.29.2.1	16972,16973
1wxcB	134	55.69		
2cx7A	130	61.11		
1t4oA	117	61.52	d.50.1.1	106425
2fcwB	80	66.86	g.12.1.1,g.12.1.1	133289,133290
1mi3A	322	67.00	c.1.7.1	91274
1xtoA	311	73.59	d.157.1.6	116030
1rpa	342	74.40		
2hejA	323	77.39		
1x47A	98	80.52	d.50.1.1	121680
2ao0A	324	81.50		
1nd6A	354	82.61	c.60.1.2	80407
1nlqA	108	84.93	b.121.3.1	85853
2fa1A	160	85.75	d.190.1.2	133182