# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	6.75e-08		
2rghA	571	12.73		
1tqzA	133	14.16	b.55.1.11	119327
2rp4A	76	15.50		
2f20A	240	16.31	d.303.1.1	132791
1p3dA	475	17.88	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1gg1A	350	21.58	c.1.10.4	29187
1x47A	98	22.91	d.50.1.1	121680
1t4nA	94	24.12	d.50.1.1	106424
1h9oA	112	25.35	d.93.1.1	60837
1kwmA	402	25.37	c.56.5.1,d.58.3.1	73079,73080
2ghaA	382	34.75		
2gz6A	388	39.16		
1eqfA	280	43.77	a.29.2.1,a.29.2.1	16972,16973
2b9kA	47	46.75		
1wxcB	134	49.61		
1jbwA	428	54.40	c.59.1.2,c.72.2.2	62860,62861
2zdiC	151	54.73		
1ijbA	202	59.59	c.62.1.1	71229
1mi3A	322	65.24	c.1.7.1	91274
1rpa	342	65.46		
1fnsA	196	68.58	c.62.1.1	34136
1of8A	370	69.29	c.1.10.4	92819
2icuA	229	73.15		
1nd6A	354	73.31	c.60.1.2	80407
2g8jA	339	73.46	d.3.1.3	134773
1zotA	358	77.98		
2ao0A	324	85.45		
2pstX	74	85.61		
2fa1A	160	86.27	d.190.1.2	133182
2a8eA	220	86.66	d.296.1.1	126397
2j05A	65	87.19		
1txnA	328	88.91	d.248.1.1	112779