# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	5.52e-10		
2f20A	240	5.372	d.303.1.1	132791
1tqzA	133	5.682	b.55.1.11	119327
2rghA	571	8.045		
1fsuA	492	10.99	c.76.1.2	35032
1p3dA	475	17.32	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1h9oA	112	18.85	d.93.1.1	60837
1t6kA	278	22.57	d.21.1.2,d.21.1.2	112261,112262
2rp4A	76	23.19		
2g8jA	339	25.01	d.3.1.3	134773
1gg1A	350	25.14	c.1.10.4	29187
2bsjA	133	26.13		
1kwmA	402	27.71	c.56.5.1,d.58.3.1	73079,73080
2pstX	74	28.46		
1ykdA	398	30.25		
1pzxA	289	30.40	c.119.1.1	95484
1mdwA	328	31.03	d.3.1.3	84934
2b9kA	47	31.26		
2gz6A	388	32.64		
2qr7A	342	33.69		
1zotA	358	39.54		
1u1wA	298	39.76	d.21.1.2,d.21.1.2	112957,112958
1wxcB	134	43.65		
1yalA	218	45.77	d.3.1.1	37025
2fa1A	160	45.99	d.190.1.2	133182
1of8A	370	48.56	c.1.10.4	92819
1rpa	342	53.82		
2dl6A	83	57.16		
1h6fA	193	57.93	b.2.5.4	70901
3nulA	130	59.37	d.110.1.1	40891
1i3zA	103	60.06	d.93.1.1	83667
2pr3B	51	62.28		
1eqfA	280	62.81	a.29.2.1,a.29.2.1	16972,16973
2i7fA	108	63.92		
1wd5A	208	64.59	c.61.1.1	114524
1m93C	41	65.13		
2fafA	608	65.44		
2p3uA	52	65.96		
2ci9A	102	67.09		
2g1lA	104	68.06	b.26.1.2	134520
1xbrA	184	69.11	b.2.5.4	22458
2icuA	229	70.35		
2ao0A	324	70.52		
1ijbA	202	70.71	c.62.1.1	71229
1t4nA	94	71.75	d.50.1.1	106424
1grx	85	72.62		
1zn6A	227	74.54	d.303.1.1	125373
1tg0A	68	77.01		
1wl7A	312	84.83	b.67.2.1	120996
2hejA	323	86.35		
1mgpA	313	87.04	c.119.1.1	79098
1xubA	298	87.68	d.21.1.2,d.21.1.2	116060,116061
1fnsA	196	88.05	c.62.1.1	34136
1ifqA	138	88.70	d.110.4.1	62350
1mi3A	322	88.83	c.1.7.1	91274