# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	5.36e-11		
2rghA	571	4.365		
2f20A	240	5.365	d.303.1.1	132791
1p3dA	475	11.17	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1tqzA	133	11.53	b.55.1.11	119327
2gz6A	388	12.47		
1t4nA	94	18.07	d.50.1.1	106424
2qqzA	126	21.15		
1h9oA	112	23.64	d.93.1.1	60837
2pstX	74	29.96		
2rp4A	76	30.41		
2b9kA	47	31.42		
1fnsA	196	32.10	c.62.1.1	34136
1ijbA	202	32.79	c.62.1.1	71229
2a8eA	220	35.12	d.296.1.1	126397
1jbwA	428	37.31	c.59.1.2,c.72.2.2	62860,62861
1wxcB	134	38.54		
1ii7A	333	39.72	d.159.1.4	62415
2ghaA	382	41.64		
1grx	85	41.98		
1k82A	268	42.86	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1h5zA	455	43.03	a.104.1.1	90622
1x8vA	455	47.10	a.104.1.1	114968
2zdiC	151	47.28		
1eqfA	280	48.00	a.29.2.1,a.29.2.1	16972,16973
2bsjA	133	48.63		
1h6fA	193	48.67	b.2.5.4	70901
1yd0A	96	49.88		
1xtoA	311	51.85	d.157.1.6	116030
1wl7A	312	52.69	b.67.2.1	120996
2g8jA	339	54.60	d.3.1.3	134773
1z6eB	52	54.62	g.3.11.1	124519
2pr3B	51	55.36		
1fp3A	402	55.57	a.102.1.3	18842
2od6A	110	56.03		
1ee8A	266	56.83	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1tg0A	68	57.16		
1b34B	118	57.58	b.38.1.1	24797
1uerA	191	57.85	a.2.11.1,d.44.1.1	107790,107791
2eaqA	90	59.13		
1acf	125	61.32		
1kwmA	402	65.16	c.56.5.1,d.58.3.1	73079,73080
1pjjA	271	65.34	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1nd6A	354	65.36	c.60.1.2	80407
2rk9A	145	66.70		
2cx7A	130	67.18		
1yalA	218	68.13	d.3.1.1	37025
1v58A	241	68.97	c.47.1.9,d.17.3.1	108371,108372
1r2zA	274	69.77	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1fjsL	52	71.68	g.3.11.1	44226
1gg1A	350	72.47	c.1.10.4	29187
2nybA	192	73.71	a.2.11.1,d.44.1.1	138804,138805
1zn6A	227	75.87	d.303.1.1	125373
2q22A	139	77.08		
1ywmA	200	77.89		
1mi3A	322	81.24	c.1.7.1	91274
1rpa	342	81.76		
1b87A	181	82.24	d.108.1.1	40797
1mdwA	328	83.82	d.3.1.3	84934
1t4oA	117	85.90	d.50.1.1	106425
1yy6A	155	86.35		
2fa1A	160	87.68	d.190.1.2	133182