# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.64e-09		
2rghA	571	8.632		
2f20A	240	9.042	d.303.1.1	132791
2gz6A	388	19.41		
1tqzA	133	21.32	b.55.1.11	119327
2rp4A	76	21.51		
1t4nA	94	27.51	d.50.1.1	106424
1fnsA	196	29.35	c.62.1.1	34136
1ijbA	202	32.58	c.62.1.1	71229
1h9oA	112	35.21	d.93.1.1	60837
1p3dA	475	39.23	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1yd0A	96	39.66		
1pjjA	271	40.39	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
2a8eA	220	42.20	d.296.1.1	126397
2ghaA	382	43.91		
1k82A	268	44.50	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1ee8A	266	46.12	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1eqfA	280	51.30	a.29.2.1,a.29.2.1	16972,16973
1nd6A	354	53.24	c.60.1.2	80407
1grx	85	53.38		
2pstX	74	53.96		
1r2zA	274	57.06	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1h5zA	455	57.65	a.104.1.1	90622
1kwmA	402	58.20	c.56.5.1,d.58.3.1	73079,73080
2cx7A	130	58.54		
2b9kA	47	60.97		
1tdzA	272	61.32	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1jbwA	428	61.36	c.59.1.2,c.72.2.2	62860,62861
2od6A	110	61.70		
2zdiC	151	65.64		
1x8vA	455	65.87	a.104.1.1	114968
1ii7A	333	67.13	d.159.1.4	62415
1h6fA	193	67.84	b.2.5.4	70901
1yy6A	155	69.68		
1xtoA	311	69.81	d.157.1.6	116030
1b34B	118	69.86	b.38.1.1	24797
1yalA	218	76.75	d.3.1.1	37025
1wxcB	134	77.94		
1rpa	342	78.60		
2qqzA	126	83.34		
1fp3A	402	86.39	a.102.1.3	18842
1ursA	402	88.69	c.94.1.1	99833
1t4oA	117	89.05	d.50.1.1	106425
2fojA	155	89.06		
2pr3B	51	89.34		
1q8bA	105	89.67	d.58.4.6	96201