# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	3.87e-09		
2f20A	240	11.16	d.303.1.1	132791
2rghA	571	11.23		
1tqzA	133	19.45	b.55.1.11	119327
2gz6A	388	24.19		
1p3dA	475	25.89	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1jbwA	428	27.61	c.59.1.2,c.72.2.2	62860,62861
1h9oA	112	27.67	d.93.1.1	60837
1t4nA	94	28.72	d.50.1.1	106424
2rp4A	76	33.94		
1fnsA	196	37.98	c.62.1.1	34136
2zdiC	151	42.84		
1kwmA	402	44.44	c.56.5.1,d.58.3.1	73079,73080
1ijbA	202	45.57	c.62.1.1	71229
2a8eA	220	45.99	d.296.1.1	126397
1grx	85	47.44		
1eqfA	280	49.71	a.29.2.1,a.29.2.1	16972,16973
1yd0A	96	50.57		
2pstX	74	57.43		
2ghaA	382	59.39		
1ii7A	333	59.94	d.159.1.4	62415
1wxcB	134	63.91		
1mi3A	322	63.96	c.1.7.1	91274
2cx7A	130	66.79		
1yalA	218	70.64	d.3.1.1	37025
1b34B	118	71.34	b.38.1.1	24797
1ee8A	266	71.73	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1k82A	268	72.01	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1nd6A	354	72.37	c.60.1.2	80407
1h5zA	455	73.73	a.104.1.1	90622
2b9kA	47	74.05		
1pjjA	271	74.74	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1h6fA	193	75.68	b.2.5.4	70901
2bsjA	133	79.79		
1yy6A	155	81.38		
2djlA	314	84.90		
1x8vA	455	86.56	a.104.1.1	114968
1ywmA	200	87.45		
2bbeA	108	88.33