# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.54e-09		
2rghA	571	8.983		
1tg0A	68	15.56		
1pjjA	271	16.23	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1p3dA	475	17.94	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2f20A	240	19.95	d.303.1.1	132791
1ee8A	266	21.06	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1tqzA	133	21.42	b.55.1.11	119327
2rp4A	76	24.85		
1h9oA	112	26.40	d.93.1.1	60837
1r2zA	274	29.39	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1tdzA	272	32.89	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
2bsjA	133	34.18		
1t4nA	94	36.12	d.50.1.1	106424
1k3xA	262	36.38	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1wl7A	312	44.11	b.67.2.1	120996
2b9kA	47	45.80		
1m93C	41	46.64		
1k82A	268	47.41	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1ijbA	202	50.52	c.62.1.1	71229
1t3lA	337	50.79	b.34.2.1,c.37.1.1	106358,106359
1acfA	125	50.97	d.110.1.1	40882
1jbwA	428	51.23	c.59.1.2,c.72.2.2	62860,62861
2qr7A	342	51.89		
2gz6A	388	53.71		
1t4oA	117	54.41	d.50.1.1	106425
1wxcB	134	55.60		
2nybA	192	56.40	a.2.11.1,d.44.1.1	138804,138805
1sjgA	112	57.43	b.33.1.1	105647
2fcwB	80	60.32	g.12.1.1,g.12.1.1	133289,133290
1fnsA	196	60.37	c.62.1.1	34136
1uerA	191	60.48	a.2.11.1,d.44.1.1	107790,107791
1iwmA	186	60.79	b.125.1.2	83758
1acf	125	62.29		
1xtoA	311	63.70	d.157.1.6	116030
1fp3A	402	66.69	a.102.1.3	18842
1gg1A	350	66.80	c.1.10.4	29187
2bhvA	246	67.38		
1pz4A	116	67.40	d.106.1.1	95400
1mai	131	71.68		
2g8jA	339	73.23	d.3.1.3	134773
1pzxA	289	73.27	c.119.1.1	95484
1r1qA	100	73.39	d.93.1.1	104763
2gojA	197	75.53		
1mgpA	313	80.07	c.119.1.1	79098
1yalA	218	81.48	d.3.1.1	37025
1h5zA	455	82.64	a.104.1.1	90622
1fqtA	112	85.58	b.33.1.1	24441
3nulA	130	87.59	d.110.1.1	40891
1t0hA	132	88.14	b.34.2.1	106207
2cx7A	130	88.89		
1eqfA	280	89.02	a.29.2.1,a.29.2.1	16972,16973
3c2uA	538	89.56		
2pr3B	51	89.58		
1b87A	181	89.63	d.108.1.1	40797