# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bidA 64 7.60e-11 1jbwA 428 0.2528 c.59.1.2,c.72.2.2 62860,62861 1pjjA 271 0.5814 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1yalA 218 2.124 d.3.1.1 37025 2rghA 571 2.527 2cftA 298 3.294 1kcbA 340 3.973 b.6.1.3,b.6.1.3 90951,90952 1txnA 328 4.835 d.248.1.1 112779 2ghaA 382 5.515 1j9qA 341 6.054 b.6.1.3,b.6.1.3 62765,62766 1uh4A 637 8.036 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1wl7A 312 8.391 b.67.2.1 120996 2gj2A 85 8.989 1zkcA 197 10.44 b.62.1.1 125182 1brmA 367 11.12 c.2.1.3,d.81.1.1 30030,39945 2pz4A 239 11.78 1b4vA 504 12.04 c.3.1.2,d.16.1.1 30334,37865 2fcwB 80 13.09 g.12.1.1,g.12.1.1 133289,133290 2o8jA 281 13.13 1nif 340 13.97 1ksiA 642 14.17 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1oaoC 729 14.46 e.26.1.3 86746 1tdzA 272 17.26 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1h9oA 112 19.08 d.93.1.1 60837 2dkfA 431 19.24 2qr7A 342 19.66 1zdsA 336 20.41 b.6.1.3,b.6.1.3 124952,124953 2pvuA 272 21.22 2cx7A 130 21.43 2bhvA 246 21.45 1z9tA 255 24.23 1t92A 116 28.79 d.24.1.3 112326 3c0bA 334 30.46 3pcgM 238 30.91 b.3.6.1 22742 1zuxA 224 30.93 1dfaA 454 31.54 b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 2bo9A 308 33.22 c.56.5.1 128897 2eaqA 90 34.19 1kwmA 402 35.30 c.56.5.1,d.58.3.1 73079,73080 2ap1A 327 35.30 c.55.1.10,c.55.1.10 127108,127109 1t4bA 367 36.81 c.2.1.3,d.81.1.1 106406,106407 1xeoA 168 37.76 d.167.1.1 121913 1p3dA 475 39.33 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2gn4A 344 39.47 2zdiC 151 40.18 1snrA 341 40.21 b.6.1.3,b.6.1.3 105823,105824 3b7nA 320 40.88 1ct9A 553 41.44 c.26.2.1,d.153.1.1 31616,41834 2b0tA 738 42.75 1t4oA 117 44.30 d.50.1.1 106425 1tqzA 133 45.61 b.55.1.11 119327 1nmmB 286 46.65 c.68.1.2 80662 1xvlA 321 47.23 c.92.2.2 122380 1yd0A 96 47.81 1fp3A 402 48.97 a.102.1.3 18842 1tk1A 260 49.02 d.248.1.1 107066 1v5vA 401 49.60 b.44.2.1,d.250.1.1 113539,113540 1yifA 533 50.26 b.29.1.23,b.67.2.1 123283,123284 1t4nA 94 52.74 d.50.1.1 106424 1oxwA 373 52.96 c.19.1.3 87539 1x8vA 455 53.01 a.104.1.1 114968 1rec 201 53.49 2po1B 277 53.54 2b9kA 47 54.89 1ydnA 295 55.99 2c1cA 312 56.13 c.56.5.1 129630 1djxA 624 57.08 a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1dtwB 342 57.29 c.36.1.7,c.48.1.2 31828,33102 1a8dA 452 57.43 b.29.1.6,b.42.4.2 24262,25607 2ao0A 324 57.48 1anf 370 57.50 1g38A 393 57.53 c.66.1.27,d.287.1.1 111567,111568 1kmoA 774 58.53 f.4.3.3 72753 2yw2A 424 59.93 1tdhA 364 61.42 a.156.1.2,b.113.1.1,g.39.1.8 106772,106773,106774 1r1qA 100 61.72 d.93.1.1 104763 1n8fA 350 61.88 c.1.10.4 85397 2qmcA 377 62.18 1s1pA 331 62.25 c.1.7.1 98350 2am1A 454 62.60 2q4mA 217 62.86 d.23.1.2 139870 1rlrA 761 63.19 a.98.1.1,c.7.1.2 18753,30679 1h5zA 455 64.21 a.104.1.1 90622 1efdN 266 65.36 c.92.2.1 35597 1v33A 366 65.43 d.264.1.1 100278 2g5fA 450 66.74 d.161.1.1 134654 2o2zA 323 67.15 2cw6A 298 67.89 1n4wA 504 67.95 c.3.1.2,d.16.1.1 91676,91677 1ro5A 201 67.96 d.108.1.3 105023 1w9pA 433 70.15 c.1.8.5,d.26.3.1 114412,114413 2gw4B 162 70.92 3bs1A 103 72.08 2vccA 891 72.41 1aipA 405 72.77 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1itvA 195 73.46 b.66.1.1 76791 1j1tA 233 73.63 b.29.1.18 90771 3c2uA 538 73.78 1m93C 41 74.69 3bbjA 272 75.84 1lopA 164 76.34 b.62.1.1 27510 2rk9A 145 76.36 1qtwA 285 76.77 c.1.15.1 29392 1ijbA 202 77.88 c.62.1.1 71229 3cioA 299 78.66 2i7vA 459 78.97 3c8mA 331 81.15 2iccA 119 81.25 2ot9A 180 81.32 2rp4A 76 81.85 1n8vA 112 84.43 a.118.21.1 85457 1mgpA 313 84.89 c.119.1.1 79098 1k55A 246 84.92 e.3.1.1 68156 2cirA 297 85.10 1wdcB 156 85.18 a.39.1.5 17302 1kypA 237 86.54 d.22.1.1 73280 1zk5A 176 86.81 1mai 131 87.95 2hejA 323 88.54 1v9tA 166 88.79 b.62.1.1 108451