# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	5.79e-09		
2rghA	571	10.46		
2f20A	240	15.76	d.303.1.1	132791
1pjjA	271	18.94	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1r2zA	274	20.45	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1ee8A	266	24.46	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1h9oA	112	29.42	d.93.1.1	60837
1tdzA	272	30.06	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1k82A	268	38.15	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1t4nA	94	39.36	d.50.1.1	106424
1jbwA	428	39.47	c.59.1.2,c.72.2.2	62860,62861
1ijbA	202	43.01	c.62.1.1	71229
1tqzA	133	43.09	b.55.1.11	119327
2rp4A	76	45.29		
1kwmA	402	50.77	c.56.5.1,d.58.3.1	73079,73080
1fnsA	196	50.78	c.62.1.1	34136
2gz6A	388	54.53		
2b9kA	47	54.92		
1mai	131	58.73		
1p3dA	475	59.14	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2ghaA	382	60.57		
1xtoA	311	60.70	d.157.1.6	116030
1eqfA	280	63.35	a.29.2.1,a.29.2.1	16972,16973
1maiA	131	70.41	b.55.1.1	26951
2icuA	229	72.52		
1t4oA	117	75.40	d.50.1.1	106425
2cx7A	130	76.56		
1k3xA	262	77.12	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1nd6A	354	77.45	c.60.1.2	80407
1fsuA	492	78.83	c.76.1.2	35032
1yalA	218	79.69	d.3.1.1	37025
1wxcB	134	80.89		
1tdhA	364	82.26	a.156.1.2,b.113.1.1,g.39.1.8	106772,106773,106774
2zdiC	151	84.94		
1fp3A	402	84.95	a.102.1.3	18842
1rpa	342	85.98		
2djlA	314	88.56