# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.42e-09		
2rp4A	76	10.94		
1tqzA	133	14.67	b.55.1.11	119327
2rghA	571	15.75		
2ghaA	382	17.83		
2f20A	240	20.84	d.303.1.1	132791
1h6fA	193	27.82	b.2.5.4	70901
1t4nA	94	31.15	d.50.1.1	106424
1h9oA	112	31.88	d.93.1.1	60837
2b9kA	47	36.91		
1fnsA	196	44.76	c.62.1.1	34136
1eqfA	280	44.88	a.29.2.1,a.29.2.1	16972,16973
1ijbA	202	45.85	c.62.1.1	71229
2gz6A	388	48.66		
1kwmA	402	53.35	c.56.5.1,d.58.3.1	73079,73080
1b34B	118	55.90	b.38.1.1	24797
1jbwA	428	59.67	c.59.1.2,c.72.2.2	62860,62861
1pjjA	271	59.69	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1ursA	402	61.95	c.94.1.1	99833
1p3dA	475	62.94	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2zdiC	151	64.61		
1xtoA	311	66.18	d.157.1.6	116030
2a8eA	220	67.75	d.296.1.1	126397
1fsuA	492	68.23	c.76.1.2	35032
1x47A	98	71.54	d.50.1.1	121680
2bsjA	133	79.03		
2icuA	229	80.18		
1gg1A	350	80.48	c.1.10.4	29187
2g2bA	150	81.93		
2pstX	74	81.96		
1wxcB	134	83.76		
1anf	370	84.96		
2q22A	139	85.51		
1yalA	218	86.12	d.3.1.1	37025