# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.27e-08		
1tqzA	133	13.80	b.55.1.11	119327
2rp4A	76	15.73		
2rghA	571	16.34		
2f20A	240	20.23	d.303.1.1	132791
2gz6A	388	22.11		
1h6fA	193	32.29	b.2.5.4	70901
1eqfA	280	36.77	a.29.2.1,a.29.2.1	16972,16973
1h9oA	112	42.46	d.93.1.1	60837
2b9kA	47	44.86		
1ijbA	202	45.45	c.62.1.1	71229
1p3dA	475	50.68	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2pr3B	51	51.96		
1fnsA	196	55.51	c.62.1.1	34136
1b34B	118	60.95	b.38.1.1	24797
1pjjA	271	61.09	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1kwmA	402	63.09	c.56.5.1,d.58.3.1	73079,73080
1yalA	218	63.88	d.3.1.1	37025
1ee8A	266	65.35	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1xtoA	311	65.63	d.157.1.6	116030
1jbwA	428	67.36	c.59.1.2,c.72.2.2	62860,62861
2ghaA	382	68.57		
1yd0A	96	71.28		
2g8jA	339	71.63	d.3.1.3	134773
2icuA	229	75.10		
1nlqA	108	75.59	b.121.3.1	85853
1wxcB	134	75.79		
1t4nA	94	76.88	d.50.1.1	106424
1ykdA	398	77.40		
1fsuA	492	79.29	c.76.1.2	35032
2iyeA	263	82.10		
1m93C	41	82.47		
1tdhA	364	83.59	a.156.1.2,b.113.1.1,g.39.1.8	106772,106773,106774