# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.12e-08		
2f20A	240	12.27	d.303.1.1	132791
1h6fA	193	12.34	b.2.5.4	70901
2rghA	571	12.73		
2rp4A	76	17.71		
1tqzA	133	22.42	b.55.1.11	119327
1h9oA	112	26.97	d.93.1.1	60837
2b9kA	47	27.27		
2gz6A	388	28.01		
1eqfA	280	36.07	a.29.2.1,a.29.2.1	16972,16973
1ijbA	202	41.06	c.62.1.1	71229
1kwmA	402	44.61	c.56.5.1,d.58.3.1	73079,73080
1ee8A	266	44.78	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1fnsA	196	44.92	c.62.1.1	34136
1xbrA	184	47.00	b.2.5.4	22458
1pjjA	271	50.74	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1t4nA	94	53.19	d.50.1.1	106424
2ghaA	382	55.72		
1yalA	218	62.74	d.3.1.1	37025
2bsjA	133	72.62		
2pr3B	51	72.78		
1wxcB	134	73.86		
2e0tA	151	74.46		
1ursA	402	83.55	c.94.1.1	99833
1ykdA	398	88.25		
2iyeA	263	88.36		
2g8jA	339	88.65	d.3.1.3	134773