# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	8.87e-08		
2qr7A	342	10.59		
1fhoA	119	14.59	b.55.1.1	26982
1t4nA	94	15.15	d.50.1.1	106424
1t4wA	196	15.21	b.2.5.2	106427
2k0mA	104	20.37		
1grx	85	20.40		
2hbtA	247	24.07		
1fnsA	196	29.25	c.62.1.1	34136
1rpa	342	31.45		
1s58A	554	35.18	b.121.5.2	105262
1ijbA	202	36.30	c.62.1.1	71229
1txnA	328	36.76	d.248.1.1	112779
2jm1A	141	40.22		
1nd6A	354	43.06	c.60.1.2	80407
1cjcA	460	46.05	c.3.1.1,c.4.1.1	30319,30604
1ry9A	145	47.12	d.198.1.1	98094
2q22A	139	50.73		
1yy6A	155	51.25		
2q8pA	260	56.61		
2f20A	240	56.95	d.303.1.1	132791
2oa2A	148	62.37		
2c42A	1231	63.56	c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5	129790,129791,129792,129793,129794
2gj2A	85	66.78		
1b34B	118	68.08	b.38.1.1	24797
1tk1A	260	72.97	d.248.1.1	107066
2c71A	216	74.22	c.6.2.3	130017
1t3yA	141	79.61	d.109.1.2	119141
2hpaA	342	86.65	c.60.1.2	33985
1rec	201	88.32