# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.02e-07		
2rghA	571	21.71		
1t4wA	196	33.59	b.2.5.2	106427
1pjjA	271	35.11	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1tk1A	260	44.88	d.248.1.1	107066
1tdzA	272	46.66	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1t4nA	94	53.97	d.50.1.1	106424
2k0mA	104	54.75		
2qr7A	342	63.01		
3thiA	371	64.80	c.94.1.1	35792
1r2zA	274	65.36	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1fnsA	196	69.59	c.62.1.1	34136
1h5zA	455	73.61	a.104.1.1	90622
1ijbA	202	77.05	c.62.1.1	71229
1b34B	118	77.39	b.38.1.1	24797
1txnA	328	78.95	d.248.1.1	112779
1th0A	226	84.61	d.3.1.7	106903
2bsjA	133	89.03