# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	0.003198		
1jkeA	145	2.145	c.110.1.1	66791
1zosA	230	2.348		
1a7tA	232	3.678	d.157.1.1	42041
1mqoA	227	4.817	d.157.1.1	103846
1m2xA	223	4.852	d.157.1.1	84764
1x8hA	228	6.664	d.157.1.1	114961
1j7gA	144	7.046	c.110.1.1	84130
1srvA	145	9.450	c.8.5.1	30817
1z5nA	242	10.82		
1mp9A	198	12.76	d.129.1.1,d.129.1.1	91385,91386
1jysA	242	12.98	c.56.2.1	77216
1z5oA	242	14.33		
1jjeA	222	17.24	d.157.1.1	63117
2qmwA	267	17.43		
2qdsA	227	18.16		
2dtcA	126	21.74		
2pjsA	119	22.37		
2qedA	258	22.83		
3tglA	269	25.67	c.69.1.17	34733
2obwA	258	29.86		
3bjuA	521	32.56		
1x8gA	227	33.06	d.157.1.1	114960
1j6wA	175	37.38	d.185.1.2	62663
2fh5A	185	44.12	d.110.4.4	133477
1ko3A	230	47.76	d.157.1.1	90974
1qjcA	158	53.07	c.26.1.3	63328
1x1oA	286	55.28		
2z0rA	103	56.26		
1vkpA	383	58.47	d.126.1.6	108686
1nkiA	135	58.52	d.32.1.2	91941
1wnaA	131	62.09	d.319.1.1	121091
2joeA	139	62.18		
1qh5A	260	63.39	d.157.1.2	42057
1r9fA	136	63.92	d.255.1.1	97257
2joqA	91	64.40		
1tibA	269	65.26	c.69.1.17	34738
1jjtA	228	66.11	d.157.1.1	63139
2hzmA	212	66.94		
2rbbA	141	67.64		
2gl5A	410	67.91	c.1.11.2,d.54.1.1	135336,135337
1q79A	514	68.27	a.160.1.1,d.218.1.3,d.58.16.1	104548,104549,104550
1stzA	338	69.72	a.4.5.51,d.110.2.3	106009,106010
1whsB	153	70.31		
1x47A	98	72.94	d.50.1.1	121680
1tib	269	76.85		
1qnaA	200	79.76	d.129.1.1,d.129.1.1	41226,41227
1vhsA	175	81.07	d.108.1.1	100698
1r9cA	139	81.41	d.32.1.2	97255
1xqaA	113	81.89	d.32.1.2	115837
2hjpA	290	83.09		
2ci1A	275	84.30		
1u5fA	148	86.73	b.55.1.1	119542
2pebA	122	87.89		
1lfpA	249	88.92	e.39.1.1	73885
1h70A	255	89.24	d.126.1.3	60711