(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0472
              10        20        30        40        50        60
              |         |         |         |         |         |
   1 PIEARYAKEVAKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKTTTIKDLT
   2 --DARYDRLTAKNGKPYFNLKAANHQIIGSSQFYASEASRDKGIESVKNNGSSTTIKDLT
   3 --DARYDRLTAKNGKPYFNLKAANHQIIGSSQFYASEASRDKGIESVKSNGSSTTIKDLT
   4 --DARYDRLTAKNGKPYFNLKAANHQIIGSSQFYASEASRDKGIESVKNNGSSTTIKDLT
   5 --DTRFDRLEAKNGKPYFNLKATNGQIIGTSEMYESVASRDNGIESVKKNAPDATVDDQT
   6 --DSKFERKTAKNGKFHFNLKAGNGQIIGSSQMYASEAGMENGIESVKKNAGNAEVKDLT
   7 --DARYERLVAKNDKPYFNLKAANHQVIGTSQFYASEQSRDKGIESVKNNGTTATVKDLT
   8 -LEERYERKSAKDGKPYFNLKAANHQIIGNSETYSSEAAREKGIASVKANGPSHNIKDLT
   9 --DARYERLVAKNDKPYFNLKAANHQVIGTSQFYASEQSRDKGIESVKNNGTTATVKDLT
  10 -QEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNT
  11 -QEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNT
  12 -IEARYAKEVAKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKTTTIKDLT
  13 -QEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNT
  14 -QEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNT
  15 -QEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNT
  16 -QEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNT
  17 -QEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKDNT
  18 -QEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKVNGTSQTVKDNT
  19 -QEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKVNGTSQTVKDNT
  20 --DNRYDRKEAKNGKPYFNLKASNGQIIGASEVYESVSARENGIESVKKNAPDAAVDDQT
  21 -IEARYAKEVAKNEKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKTTTIKDLT
  22 ---ARYEKKVAANGKHHFNLKAANHQIIGSSQMYASEAACDNGIESVKTNGKSTTVKDST
  23 -LESQYELKHNTKNEPYFVLKAKNHQIIGVSESYSSEAAAKNGIASVMKNGPTTIIKDLT
  24 --DERYEKKTASNGKFYFNLKAANHQIIGTSQMYATAQSRETGIASVKVNGASQTVKDNT
  25 -QEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASAKANGTSQTVKDNT
  26 -HESQYELKHNTKNEPYFVLKAKNHQVIGISESYSSEAAAKNGIASVTKNGPTTTIKDLT
  27 -LESQYELKRNVKNEPYFVLKAKNHQIIGISESYSSEAAAKNGIASVTKNGPTTTIKDLT
  28 -LESQYESKRNVKNEPYFVLKAKNHQVIGVSEAYSSEAAAKNGIASVMKNGPTATIKDLT
  29 -LSERYDKEVSTNGKPYFNLKAGNHQIIGTSQMYSSEQARDAGIAAVKVNGTTGTVKDKT
  30 -LESQYEVKHNAKNEPYFVLKAKNHQVIGVSEAYSSETAAKNGITSVMKNGPTPTIKDLT
  31 -LDERYEKKSTKDGHPYFNLKAANHQIIGSSESYSSDAACAKGIASVKANGPSKVIKDKT
  32 --MARFEIKKSSNDQYYFVLKANNGQVILQSETYTSKQNCNNCIKSIKENAPDAEVADLT
  33 -HDNLYDRRESKKQEPYFVLKATNGQIIGNSEMYSSTSAMENGISSVKTNAPGAPVEDLT
  34 -HDNLYDRRESKRQEPYFVLKATNGQIIGNSEMYSSTSAMENGISSVKTNAPGAPVEDLT
  35 --DSKFESKKSKNDKFYFNLKATNGQIIGTSEMYETEASCKNGIASVKSNAPAAEIED--
  36 -LDERYERKISSNDKPYFNLKAANHQIIGTSQLYSSAAARDNGIESVKTNGPATTIK---
  37 -MSAKFEIYKDKAGEFRFRLKAANGEIIASSEGYSSKQACENGIKSVKTNAADAGIDDQT
  38 -HEAQYEIKHSTSNQPYFVLKAKNHQVIGVSEMYSSETAAKNGIQSVIKNGPNTDVRDL-
  39 -DDARYERKTTESGKYRFNLKSGNNQVIGTSESYETEKARDGGIESVKKNAPTAVIADMT
  40 -LDEQYERKISTNDQYYFVLKGGNWEIIGVSQMYTTRDSRETGIASVKANGPDAPTHDLT
  41 --DTKFERKTAKNGKFYFNLKASNGQIIGSSQMYAGEAGMENGISSVSENAPNASIK---
  42 ----KFEIYKDKAGEFRFRLKAANGEIIASSEGYSSKQACENGIKSVKTNAADAGIDDQT
  43 --DANFELKTSVAGEPFFVLKAKNGQIIGKSEMYSSTGARDNGVASVKNNSSSTTVNDLT
  44 --EARFERKETAAGKHMFNLKASNGQVIGTSQSYASASGRDGGIESVMRNAPEARIEDLT
  45 ---KRYERKETSSGKHMFNLKAGNGQVIGTSQSYTSASGRDNGIESVMRNAPEAKLDDQT
  46 --DGRYERLSGKDGSPYFTLKAGNGQVIGVSEMYASASARDGGIESCKTNAPGAATTDLT
  47 -MDRCYDRKTSTAGQPYFVLNALNGQAIGKSQMYSSTYARDRGIESVKANGPNAPLVDLT
  48 --AERYEKKTASNGKEHFNLKAANHQVIGSSQLYASAASRDAGIESVRKNGATTSIKDL-
  49 -DDARYQRLTAKDGSPYFSLTATNGQSIGRSEMYKTTQARDNGIASVKSNAPGAPTKDQT
  50 -DDARYQRLTAKDGSPYFSLTATNGQSIGRSEMYKTTQARDNGIASVKSNAPGAPTKDQT
  51 --DERYERKTASDGRFYFTLKAANHQVIGTSPMYKSADARDTGIASVKAHGPSGTVQD--
  52 --MGHYEIKKAKNGQYYFNLKASNGEIILSSEMYASKASAENGITSVQSNS---------
  53 --MGHYEIKKAKNGQYHFNLKASNGEIILSSEMYASKASAENGIASVQSNS---------
  54 ---ARYERKSSTKGQPYFVMKATNGQVIGKSQMYSNAVSMEKGIKSVGLNAPGADTLDLT
  55 ---ERYEKKEAENGKFYFNLKAANHEVIGTSQMYASKGSRDDGIASVKANGAATTTK---
  56 ---GHYEIKKAKNGQYHFNLKASNGEIILSSEMYASKASAENGIASVQSNS---------
  57 --MGHYEIKKAKNGQYHFNLKASNGEIILSSEMYASKASAENGISSVQSNS---------
  58 ---SRYNLATASNGKFYFTLRAANNQIIGNSQMYSTEAARNAGIESVKQNGSTQEIRD--
  59 ---GHYEIKKAKNGQYHFNLKASNGEIILTSEMYASKASAENGISSVQSNS---------
  60 ---GHYELKKAKNGQYHFNLKASNGEIILASEMYASKASAENGIASVQTNS---------
  61 ---AMFERDQSSSGKPFFNLKAANGQVIGSSQMYSSASAMENGIQSVKKNAPGADV----
  62 ----KFELFKDTAGQFRFHLKAANGEIIAASQGYTSKAAAQNGIESIKSNAATAPTDDLT
  63 -LDERYERKTASNGKAFFNLKAANHQVIGTSQMYATEAAREADIARVKAEGASKTVKEK-
  64 -DDARYERKASGADKFMFNLKAGNHQVVGTSQSYASEASRDKGIESVKNHAPDAKV----
  65 -DDARYERKASGADKFMFNLKAGNHQVVGTSQSYASEASRDKGIESVKNHAPDAKV----
  66 -LDERYERKLAHNGEPMFNLKAANHQIIGTSETYKTVQGRENGIAAVKRDAPIAE-----
  67 -LDERYERKLAHNGEPMFNLKAANHQIIGTSETYKTVQGRENGIAAVKRDAPIAE-----
  68 -MSGWYEISQAKDGQYRFVLKAGNGEIILTSELYKAKASAENGIASVQKN----------
  69 -LDERYERKLAHNGEPMFNLKAANHQIIGTSETYKTVQGRENGIAAVKRDAPVA------
  70 -FDERYERKIAHNGEHMFNLKAANHQVIGTSETYKSTQGRDNGIAAVKRDAPAAE-----
  71 -------------QPYYFVLKAANHEIIASSEMYSTKQAALKGIASVQKNAATDEIKDLT
  72 ----NFEIRENKSGKSYFVLKARNYQVIGISESYDNEVAVKKGIQSAIKHGSSVNVRDLT
  73 ---GWYELKLAKDGQFMFNLIAANGQVILTSELYKAKASAEKGIESVQKNG---------
  74 --DGAFEVKPANNGKFHFVLKATNGQVVGQSQLYASQANAEAGVQSVKRAAPEAGLSD--
  75 ---GHFELSKSSDGQFRFVLKAGNGEIILTSELYKTRAAAENGIASVQTNS---------
  76 -LDERYERKIAHNGEYMFNLKAANHLVIGTSETYKSTQGRDNGIAAVKRDAPDAET----
  77 ---GYFELSKSSDGQFRFVLKAGNHETILTSELYKTKAAAENGIESVQKNC---------
  78 --DGAFEVKPASNGKFHFVLKATNGQVVGQSQLYASQANAEAGVQSVKRAAPEAGLSD--
  79 ----KFEIKRASDGQFHFNLKAGNNQVILTSEMYTTKAAAINGINSVQTNA---------
  80 -LDERYERKVAHNGEYMFNLKAANRQVIGTSETYKSTQGRDNGIAAVKRDAPVA------
  81 ----KFEVKTDKAGKYRFNLKSGNGQVILSSQGYSSKEACENGIESVKKNS---------
  82 ---GWYEISQAKDGQYRFVLKAGNGEIILTSELYKAKASAENGIASVQKN----------
  83 -------TTKSEQPQPYFVLKAKNHQEIGRSQYYSSPEAAKNGVKSVMNNAATTQIKDKT
  84 ---GWFELKKASNGQFHFALKAGNAETILTSEMYTAKASAENGIASVQKNS---------
  85 -MAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKASAEKGIASVRSNS---------
  86 -MAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKASAEKGIASVRSNS---------
  87 ---GHYDLKRTKNKQYYFNLKASNGEVILTSEMYTTKAAANKGIRSVQANSP--------
  88 ---EAFEVRESSNGKHYFVLKATNGQVIGQSQMYASLHSAEQGCDSVRRHAPNAALQD--
  89 ----KFELKVAANNQFHFNLKAGNGQVILTSEMYTTKAAALKGINSVQTNA---------
  90 -MAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKASAEKGIASVRSNS---------
  91 ---GWYEVSESAKGQFRFVLKAGNGEIILTSELYKTKASALNGIASVRTNC---------
  92 ---SKFEVYLDEGGKYRFRLRARNGQIIAVSQGYKSEEGCIKGIQSVKENAPNARI----
  93 -MAGWFELSKSSDSQFRFVLKAGNGETILTSELYTSKASAEKGIASVRSNS---------
  94 ---GWFELDHSSNGQYRFVLKAGNAETILSSETYTSKDAAENGIESVRKNA---------
  95 ----KFEVYLDEGGKYRFRLRARNGQIIAVSQGYKSEEGCIKGIQSVKENAPNARI----
  96 -MSGTFEIYNDKAGEFRFRLKANNGQAILASEGYKDKSGCLNGVESVKKNA---------
  97 -----FEIYKDAKEEFRWRLKAGNHEVIATNQAYTTKQGCQKGIEAVKKVTHETEVKDLT
  98 ---GWYELTKNDKEQYHFVLKAGNGEVILRSETYESKAAAQNGIASVQKNS---------
  99 ---GWYELKKSSNGQFRFVLKAANAEVILSSEQYTTRAAAENGIASVQAN----------
 100 ---GWFELSKSSDNQFRFVLKAGNGETILTSELYTSKASAEKGIASVRSNS---------
 101 ---GWFELSKSSDNQFRFVLKAGNGETILTSELYTSKASAEKGIASVRSNS---------
 102 ---GWFELSKSSDNQFRFVLKAGNGETILTSELYTSKASAEKGIASVRSNS---------
 103 ---GWFELSKSSDNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSNS---------
 104 ----KFEIYTDKSGKYRFRLKAKNGEIVATGQGYATKAGCMNGIKSVKNNAMDAEIV---
 105 ---GWYELSKSSNDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNS---------
 106 ----KFELYTDNAGEFRFRLKAGNGENILASEGYKQKASAENGIESVKKNA---------
 107 --DGAFEVKPASNGKFHFVLKATNGQVVGQSQLYASQANAEAGVQSVKRAAPEAGLS---
 108 ---GWFELSESSDNQFRFVLKAGNGETILTSELYTSKASAEKGIASVRSNS---------
 109 ---GWFELSKSSDSQFRFVLKAGNGETILTSELYTSKASAEKGIASVRSNS---------
 110 ----KFEITQDKSGKFRFKLKARNGQIILSSQAYTTKSAAEKGIESVKINS---------
 111 ----KFELMKATNGQYYFHLKSGNGEIILASERYEEKSGAKNGIASVRENA---------
 112 ---GWFELGKSSDNQFRFVLKAGNGEIILTSELYTSKASAEKGIASVRSN----------
 113 ---GWYELSKSSNGQYKFVLKAANAETILTSELYTSRTAAENGIASVQTNS---------
 114 ---GWYELSKSSNEQFKFVLKAGNGEVILTSELYTGKSGALNGIESVQTNS---------
 115 ----KFELMKATNGQYYFHLKSGNGEIILASERYEEKSGARNGIASVRENA---------
 116 ----KFHLKKAKDGQFHFNLHAANGEIILTSELYKAKDSALNGIDSVRKNA---------
 117 ----KFELKKAVNGQYYFHLKSANGEIILASERYEEKSGARNGIASVRENA---------
 118 ---GKFELKKAKNDKYFFSLLAGNGQKILASEMYDTKASAVGGIESVKKNA---------
 119 -MAGKFELKKGKTGKFSFNLKSGNGQVVFTSQTYDSKRSATAGITSVKKNA---------
 120 ----KFEIKKATNGQYFFHLKSANGEIILASERYEEKRGAQTGIASVRENA---------
 121 ----KFEIKKATNGQYFFHLKSANGEIILASERYEEKGGARTGIASVRENA---------
 122 ----KFEIKKATNGQYFFHLKSANGEIILASERYEEKGGARTGIASVRENA---------
 123 ----LYELKKNDSDQFSFALKAENGEVILRSELYETKPSAQNGIASVQKNS---------
 124 --DGAFEVKPANNGKFHFVLKATNGQVVGQSQLYASQANAEAGVQSVKRATPEA------
 125 --DGAFEVKPANNGKFHFVLKATNGQVVGQSQLYASQANAEAGVQSVKRATPKA------
 126 ---GKFELYQDKAGEYRFRLKAGNGENILASEGYKQKSSAENGIESVRKNA---------
 127 ----KFEIYKDKAGEFRFRLKATNGQTILASEGYKARAGCMNGVESVRKNA---------
 128 ---GWYEITQANDGQYRFVLKAGNGEIILNSELYKAKASAVNGIESVQKN----------
 129 ---GWYEITQANDGQYRFVLKAGNGEIILNSELYKAKASAVNGIESVQKN----------
 130 ---GWYEITQANDGQYRFVLKAGNGEIILNSELYKAKASAVNGIESVQKN----------
 131 ----TFEIYNDKAGEFRFRLKANNGQAILASEGYKDKSGCLNGVESVKKNA---------
 132 -----FVITKRTNGEFQFNLKAGNGQTILTSEGYTTKAACTNGIESVKTN----------
 133 ----KFHLKKAKDGQFHFNLHAANGEIILTSELYKAKDSALGGIESVRKN----------
 134 ----KFHLKKAKDGQFHFNLHAANGEIILTSELYKAKDSALGGIESVRKN----------
 135 ----KFHLKKAKDGQFHFNLHAANGEIILTSELYKAKDSALGGIESVRKN----------
 136 ----KFHLKKAKDGQFHFNLHAANGEIILTSELYKAKDSALGGIESVRKN----------
 137 ----GYFVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQDGIASVQKNA---------
 138 -----YDLKKDKSGKFTFNLKAGNGQVILTGQSYASKQGAQDGIASVRT-----------
 139 ---GKFEIYKDKSNKFRFRLKAGNGEVIAVGEAYESKAGCLSGIESVRKNAPDAA-----
 140 ------------NQKFYFNLKAKNGQIIMSSQGYADKSGAKNGIESCKKNS---------
 141 ------FVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQDGIASVQKNA---------
 142 --DSRYEKKDS-YQNYTFNLKAANGEIIGRSESYTSSAGRDGGIFAVKHDASSAEIVDL-
 143 -----FVITKRANGEFQFSLKAGNGQEILGSEGYKTKDACENGINSVKKN----------
 144 -----FVISTRKNGEFQFSLKAGNGQEILGSEGYTTKAACLNGVESVKKN----------
 145 ----------EDGNTYHFVLKAKNGQVILSSEVYNSKSAASNGIESVKKN----------
 146 ----------SRNSQYYFRLKSGNSEIILGSEGYVSKQGCLNGIDSVKANA---------
 147 -------RKRSNDGKFYFNLKAANGQIIGTSPLYNSKTGREGSIHTLK------------
 148 ---ARYELFEGIDEQFYFRLIAANGEQILRSEGYVSKQGAQNGISSVRVN----------
 149 ---GWYELSKSSDGQFRFVLKDGTGDTLLTSELYKARSSAEQGVASVQAN----------
 150 ---AIFERRTDHRGRFQFTLRSPGGQVLGHSQFYQSEAGMENGIANI-------------
 151 -----FQIFKGVNNQWYWRLKAANHEIIAVSEGYTTKQNCLHCIHLVMDT----------
 152 -----------QNANYYFRLKAGNGEIILQSEGYLNKGGAENGVESVR------------
 153 -----FQIFQGVNNQWYWRLKAANHETIAVSEGYTTKQNCLHCIGLVMD-----------
 154 ----RYVKKISSGGKPFFKLKSG-KEVILVSHLYDSEATLESAISAIASAGTTERV----
 155 ---AWFELKQYGSGACRFLLKTKEAQTMLQSDRYPCRDSAE-------------------