# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	7.86e-08		
1gln	468	19.34		
1zn6A	227	26.18	d.303.1.1	125373
2b9kA	47	34.11		
2il5A	171	38.55		
1izoA	417	40.00	a.104.1.1	83851
2f20A	240	41.25	d.303.1.1	132791
2c1fA	234	43.25		
1cjxA	357	45.42	d.32.1.3,d.32.1.3	38516,38517
2vccA	891	47.74		
2gffA	106	49.32		
1j09A	468	52.85	a.97.1.1,c.26.1.1	77025,77026
2e55A	208	59.54		
1h5zA	455	62.77	a.104.1.1	90622
2rp4A	76	63.03		
1xe0A	114	65.27	b.121.3.1	115197
2bbeA	108	65.29		
1wr3A	36	66.00		
1v8cA	168	75.84	d.15.3.1,d.129.5.1	100495,100496
2cibA	455	78.37		
1o7zA	77	86.72	d.9.1.1	86660
2q22A	139	87.01		
2z0tA	109	87.32		
3b5lB	198	87.96		
2iagA	482	89.47		
1r9oA	477	89.66	a.104.1.1	104878