# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.02e-05		
2il5A	171	17.03		
1v8cA	168	45.04	d.15.3.1,d.129.5.1	100495,100496
2cibA	455	45.69		
1zn6A	227	48.09	d.303.1.1	125373
1h5zA	455	50.01	a.104.1.1	90622
2f20A	240	50.16	d.303.1.1	132791
2e74D	179	53.44	b.33.1.1,f.23.12.1	132049,132050
2iagA	482	59.05		
1izoA	417	64.32	a.104.1.1	83851
3claA	213	66.16	c.43.1.1	32610
2ve3A	444	66.57		
1xe0A	114	67.19	b.121.3.1	115197
2c1fA	234	69.55		
1zo4A	473	73.11		
2gffA	106	74.13		
1gln	468	74.56		
1wr3A	36	76.36		
1jpzA	473	81.23	a.104.1.1	67069
2bokL	55	81.28	g.3.11.1	128917
2b9kA	47	81.60		
2vccA	891	81.64		
1r9oA	477	85.27	a.104.1.1	104878
3b6hA	498	86.81		
1v9sA	208	87.01	c.61.1.1	119894
2ij2A	470	87.22	a.104.1.1	137449
1cjxA	357	87.83	d.32.1.3,d.32.1.3	38516,38517
2e55A	208	88.05