# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	8.09e-06		
2il5A	171	35.30		
1zn6A	227	45.78	d.303.1.1	125373
2e74D	179	48.90	b.33.1.1,f.23.12.1	132049,132050
2gffA	106	51.32		
1h5zA	455	55.10	a.104.1.1	90622
2f20A	240	59.07	d.303.1.1	132791
2cibA	455	59.67		
1cjxA	357	64.66	d.32.1.3,d.32.1.3	38516,38517
1v8cA	168	65.40	d.15.3.1,d.129.5.1	100495,100496
1gln	468	69.34		
2c1fA	234	69.91		
1xe0A	114	70.48	b.121.3.1	115197
2b9kA	47	77.69		
2bbeA	108	79.95		
1v9sA	208	81.18	c.61.1.1	119894
2ve3A	444	84.19		
2bokL	55	85.09	g.3.11.1	128917
2iagA	482	85.63		
1izoA	417	87.55	a.104.1.1	83851