# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.94e-08		
1zn6A	227	16.43	d.303.1.1	125373
2gffA	106	19.57		
2bbeA	108	22.82		
1wr3A	36	28.49		
1x7vA	99	30.07	d.58.4.11	109501
1t4fM	110	31.76	a.42.1.1	119144
2axiA	115	32.93	a.42.1.1	127494
1wgwA	99	36.36	a.24.13.1	114625
2f20A	240	54.99	d.303.1.1	132791
1g8jB	133	55.28	b.33.1.1	24439
1t92A	116	65.82	d.24.1.3	112326
2rp4A	76	68.47		
1wmvA	54	68.93		
1wr4A	36	74.13		
2e74D	179	75.64	b.33.1.1,f.23.12.1	132049,132050
2g35A	100	77.72	b.55.1.5	134548
1zo4A	473	79.47		
1u5dA	108	80.13	b.55.1.1	119536
2fb0A	94	80.68		
1bxyA	60	85.96	d.59.1.1	39525