# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.07e-08		
2il5A	171	8.753		
2e74D	179	20.25	b.33.1.1,f.23.12.1	132049,132050
1v8cA	168	23.52	d.15.3.1,d.129.5.1	100495,100496
1zn6A	227	23.61	d.303.1.1	125373
3claA	213	27.67	c.43.1.1	32610
1h5zA	455	27.86	a.104.1.1	90622
1wr3A	36	28.74		
2cibA	455	34.60		
1xe0A	114	37.29	b.121.3.1	115197
1gln	468	37.81		
1r9oA	477	37.99	a.104.1.1	104878
2c1fA	234	39.44		
2b9kA	47	40.75		
2iagA	482	40.93		
1jpzA	473	41.06	a.104.1.1	67069
1g8jB	133	41.20	b.33.1.1	24439
2f20A	240	42.75	d.303.1.1	132791
1zo4A	473	43.16		
1vpzA	73	45.33	b.151.1.1	113998
2gffA	106	47.72		
1izoA	417	47.76	a.104.1.1	83851
3b6hA	498	55.98		
1y4wA	518	56.40	b.29.1.19,b.67.2.3	116470,116471
1wmvA	54	57.25		
2ij2A	470	59.13	a.104.1.1	137449
2vccA	891	59.34		
1wr7A	41	62.73		
2ve3A	444	63.87		
2ac1A	541	65.78		
2fdvA	476	66.39		
2hi4A	495	67.23		
2bokL	55	69.63	g.3.11.1	128917
2rp4A	76	69.96		
1po5A	476	71.60	a.104.1.1	94963
3c6gA	479	72.84		
1cjxA	357	76.09	d.32.1.3,d.32.1.3	38516,38517
2q1mA	130	76.81		
1yprA	125	77.53	d.110.1.1	40888
2e55A	208	79.16		
1odoA	408	81.17	a.104.1.1	92783
2z0tA	109	81.23		
2bbeA	108	83.09		
1yd0A	96	85.37		
1jipA	403	86.01	a.104.1.1	66748
1v3yA	192	86.35	d.167.1.1	113508
1nr6A	473	86.41	a.104.1.1	92085
3b42A	135	88.20		
2fkiA	126	89.03	d.198.3.1	133657
1iwmA	186	89.92	b.125.1.2	83758