# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bidA 64 5.60e-10 1celA 434 1.105 b.29.1.10 24280 2dt4A 143 4.986 1c24A 263 6.373 d.127.1.1 41148 1z2zA 446 7.231 1m4mA 140 8.035 g.52.1.1 78605 2vccA 891 10.24 1a36A 592 10.60 a.2.8.1,d.163.1.2,e.15.1.1 15715,42173,43266 1bqyA 234 11.33 b.47.1.2 26332 2c1fA 234 12.43 1t92A 116 13.01 d.24.1.3 112326 2il5A 171 14.03 1vfsA 386 14.28 b.49.2.2,c.1.6.1 108584,108585 1xfiA 367 15.53 e.50.1.1 109584 1rx0A 393 15.75 a.29.3.1,e.6.1.1 98007,98008 1h9hE 223 16.27 b.47.1.2 103810 1tz7A 505 20.22 c.1.8.1 119394 2gk4A 232 22.05 2dkfA 431 23.30 1o0xA 262 25.29 d.127.1.1 80755 1j09A 468 26.28 a.97.1.1,c.26.1.1 77025,77026 1y4wA 518 26.87 b.29.1.19,b.67.2.3 116470,116471 4matA 278 27.04 d.127.1.1 41150 1x1fA 149 29.48 b.55.1.1 121579 2j5wA 1065 30.61 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 138067,138068,138069,138070,138071 2b9kA 47 31.26 1l1qA 186 32.26 c.61.1.1 77653 1olmA 403 32.30 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1smlA 269 32.38 d.157.1.1 42053 1cl8A 276 34.64 c.52.1.1 33230 1zdsA 336 36.29 b.6.1.3,b.6.1.3 124952,124953 1q2bA 434 36.45 b.29.1.10 95624 3caxA 369 37.60 1obdA 306 37.97 d.143.1.1 86767 1vl7A 157 38.81 b.45.1.1 108732 2p3eA 420 39.41 2bhvA 246 39.45 1t3bA 211 39.55 c.47.1.9,d.17.3.1 106341,106342 1ksiB 642 39.55 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 1o5oA 221 39.65 c.61.1.1 92509 2ez2A 456 42.79 1jb0D 138 43.80 d.187.1.1 62823 2nsmA 439 44.14 2vgeA 229 44.77 1zn6A 227 45.91 d.303.1.1 125373 1n4wA 504 46.28 c.3.1.2,d.16.1.1 91676,91677 1o7zA 77 47.15 d.9.1.1 86660 1vm9A 111 47.18 b.33.1.1 108886 1g8jB 133 47.54 b.33.1.1 24439 2bazA 142 47.62 1adjA 421 49.28 c.51.1.1,d.104.1.1 33188,40737 1z9tA 255 50.97 2qf7A 1165 51.95 2dznA 228 52.92 1heiA 451 53.38 c.37.1.14,c.37.1.14 32463,32464 1dioA 554 53.40 c.1.19.3 29656 1hdiA 413 54.08 c.86.1.1 60964 2arzA 247 54.46 b.45.1.1 127225 1h3qA 140 54.98 d.110.4.3 76652 1y0hA 105 55.27 d.58.4.11 116303 1u8vA 490 55.54 a.29.3.1,e.6.1.1 113196,113197 1j6wA 175 55.57 d.185.1.2 62663 1xsjA 778 55.80 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1jjiA 311 57.19 c.69.1.2 66766 1b5fA 239 57.26 b.50.1.2 26836 4cpvA 108 57.76 a.39.1.4 17198 2v0uA 146 60.05 1nycA 111 60.93 b.61.2.2 92336 1owqA 361 61.57 c.1.8.5,d.26.3.1 104041,104042 1n9lA 109 61.61 d.110.3.6 85468 2h5gA 463 63.68 2cnqA 306 63.94 d.143.1.1 130646 1vf8A 377 67.86 c.1.8.5,d.26.3.1 120029,120030 1gppA 237 68.24 b.86.1.2 76262 1dymA 402 69.48 b.29.1.10 24304 1f3zA 161 69.81 b.84.3.1 28273 1s1pA 331 72.69 c.1.7.1 98350 2euaA 431 74.45 d.161.1.1 132380 1up8A 598 75.12 a.111.1.2 99710 2gffA 106 80.00 2f42A 179 80.90 1v8cA 168 82.23 d.15.3.1,d.129.5.1 100495,100496 1f7lA 121 82.37 d.150.1.2 59666 1a48 306 84.25 1dfcA 493 84.48 b.42.5.1,b.42.5.1,b.42.5.1,b.42.5.1 25616,25617,25618,25619 1schA 294 85.20 a.93.1.1 18685 2i8dA 123 86.03 1j7gA 144 86.37 c.110.1.1 84130 1h8dH 260 88.40 2oxnA 340 88.83 2dg1A 333 89.32 b.68.6.1 131493 1hbzA 498 89.38 e.5.1.1 60937