# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	4.87e-06		
2bbeA	108	21.50		
2gffA	106	22.55		
1xe0A	114	32.51	b.121.3.1	115197
1x7vA	99	33.56	d.58.4.11	109501
1h5zA	455	35.02	a.104.1.1	90622
1g8jB	133	35.21	b.33.1.1	24439
2e74D	179	35.97	b.33.1.1,f.23.12.1	132049,132050
2iagA	482	37.21		
2cibA	455	40.69		
2ve3A	444	41.31		
1nlqA	108	55.54	b.121.3.1	85853
2fb0A	94	60.38		
1k5jA	124	62.44	b.121.3.1	68201
1wr3A	36	65.81		
2qltA	275	76.26		
3b6hA	498	78.65		
2b9kA	47	83.68		
2dg5B	190	87.15		
1u13A	455	89.45	a.104.1.1	107578