# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	8.94e-07		
1j7gA	144	7.917	c.110.1.1	84130
2qntA	141	9.519		
1t4nA	94	10.71	d.50.1.1	106424
1u9yA	284	14.59	c.61.1.2,c.61.1.2	119655,119656
1pzxA	289	15.42	c.119.1.1	95484
2p14A	192	15.67		
2j01Q	141	18.94		
1jkeA	145	22.57	c.110.1.1	66791
1mqoA	227	22.80	d.157.1.1	103846
1srvA	145	23.86	c.8.5.1	30817
1qgoA	264	25.49	c.92.1.2	35596
1t4oA	117	26.31	d.50.1.1	106425
1pjaA	302	28.05	c.69.1.13	94758
3c19A	186	28.38		
2fmmA	74	30.33	b.34.13.2	133782
1wgwA	99	32.10	a.24.13.1	114625
1z7gA	217	33.37	c.61.1.1	124624
2yztA	67	34.01		
1ko3A	230	34.35	d.157.1.1	90974
1jeoA	180	34.75	c.80.1.3	66611
1n25A	368	35.30	c.37.1.20	85264
1jmvA	141	36.04	c.26.2.4	66897
1x54A	434	38.29		
1lt5D	103	38.67	b.40.2.1	24875
1kid	203	39.64		
1m2xA	223	42.19	d.157.1.1	84764
2pgwA	384	43.59		
2ez6A	221	43.63	a.149.1.1,d.50.1.1	132616,132617
1kidA	203	45.35	c.8.5.1	30771
1mh1	186	45.64		
2cuyA	305	46.65		
1dkuA	317	49.09	c.61.1.2,c.61.1.2	34118,34119
2b3fA	400	50.45		
1kaoA	167	51.23	c.37.1.8	32014
1mgtA	174	52.83	a.4.2.1,c.55.7.1	16078,33753
2q83A	346	53.49		
1jdfA	447	56.52	c.1.11.2,d.54.1.1	62897,62898
1bovA	69	59.54	b.40.2.1	25070
1a4rA	191	59.91	c.37.1.8	32063
1zm0A	114	60.57	b.55.1.1	125276
2gs8A	317	60.77		
1vjlA	164	61.58	d.257.1.1	100822
1mdl	359	62.66		
1ftrA	296	63.30	d.58.33.1,d.58.33.1	39485,39486
3bjuA	521	63.96		
1tx4B	178	64.18	c.37.1.8	32045
2nugA	221	70.99		
1qw2A	102	72.61	d.249.1.1	96456
1c0aA	585	80.04	b.40.4.1,d.74.4.1,d.104.1.1	25246,39731,40767
3citA	160	80.62		
2q3uA	383	81.08	d.126.1.6	139809
1jjtA	228	82.14	d.157.1.1	63139
1jj2H	167	83.90	d.41.4.1	63093
2q07A	306	85.22		
1xtnA	120	85.96	d.189.1.1	116028
1z5oA	242	86.18		
2rbbA	141	87.32		
1tz7A	505	88.08	c.1.8.1	119394
1fsgA	233	88.94	c.61.1.1	34029
1zosA	230	88.96		
1u5fA	148	89.67	b.55.1.1	119542