# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	5.74e-09		
2fa1A	160	5.742	d.190.1.2	133182
2yhx	457	9.848		
2yhxA	457	22.86	i.12.1.1	46024
1yk3A	210	26.18	d.108.1.1	123493
3ci0I	89	34.23		
1lq9A	112	41.17	d.58.4.3	78129
2i79A	172	41.38		
1t4nA	94	43.88	d.50.1.1	106424
1atzA	189	44.86	c.62.1.1	34132
2bz6L	53	45.42	g.3.11.1	129553
2rp4A	76	47.33		
1yd0A	96	57.83		
2p3uA	52	57.85		
1k8kD	300	58.10	d.198.2.1,d.198.2.1	68309,68310
1pt6A	213	59.09	c.62.1.1	95091
1v7pC	200	61.05	c.62.1.1	108408
1vplA	256	61.66	c.37.1.12	113966
1vjuA	309	64.93	d.248.1.1	100835
2b9kA	47	65.08		
2pr3B	51	66.16		
2yrlA	102	67.10		
2d4qA	257	67.90		
1r17A	343	70.16	b.2.3.4,b.2.3.4	96796,96797
1yloA	348	76.72	b.49.3.1,c.56.5.4	123659,123660
1gxjA	186	79.29	d.215.1.1	70707
2p19A	149	81.06		
1vi3A	170	84.28	b.17.1.2	100730
3b5lB	198	84.58		
1obdA	306	86.14	d.143.1.1	86767
2ooiA	162	88.45		
2hx0A	154	88.59	d.290.1.3	136830
1nlqA	108	88.76	b.121.3.1	85853
2cnqA	306	89.33	d.143.1.1	130646