# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	5.46e-09		
2fa1A	160	4.840	d.190.1.2	133182
2yhx	457	11.92		
1yk3A	210	13.23	d.108.1.1	123493
2rp4A	76	20.75		
2yhxA	457	24.09	i.12.1.1	46024
2i79A	172	31.66		
2b9kA	47	33.88		
1t4nA	94	34.38	d.50.1.1	106424
3ci0I	89	39.31		
1lq9A	112	42.01	d.58.4.3	78129
1atzA	189	43.55	c.62.1.1	34132
2d4qA	257	47.38		
2p3uA	52	48.46		
2pr3B	51	50.37		
2yrlA	102	62.80		
3pcgA	200	66.02	b.3.6.1	22647
2bz6L	53	66.29	g.3.11.1	129553
1k8kD	300	67.07	d.198.2.1,d.198.2.1	68309,68310
1v7pC	200	67.41	c.62.1.1	108408
1yloA	348	70.85	b.49.3.1,c.56.5.4	123659,123660
1vi3A	170	75.94	b.17.1.2	100730
1pt6A	213	76.27	c.62.1.1	95091
1r17A	343	79.51	b.2.3.4,b.2.3.4	96796,96797
3buxB	329	80.61		
1yd0A	96	81.72		
3b5lB	198	82.49		
2p19A	149	83.46		
1yvhA	329	84.53	a.39.1.7,a.48.1.1,d.93.1.1	124096,124097,124098
1m93C	41	85.01