# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	2.21e-10		
2fa1A	160	1.774	d.190.1.2	133182
2p3uA	52	6.762		
1r17A	343	9.225	b.2.3.4,b.2.3.4	96796,96797
2yhx	457	9.540		
1yk3A	210	12.10	d.108.1.1	123493
2pr3B	51	12.20		
2i79A	172	14.41		
3buxB	329	25.75		
2yhxA	457	27.97	i.12.1.1	46024
1obdA	306	28.11	d.143.1.1	86767
2bz6L	53	28.26	g.3.11.1	129553
2cnqA	306	30.11	d.143.1.1	130646
1yvhA	329	30.82	a.39.1.7,a.48.1.1,d.93.1.1	124096,124097,124098
1atzA	189	31.21	c.62.1.1	34132
2d42A	249	31.76		
1h8dH	260	32.91		
1z6eB	52	34.22	g.3.11.1	124519
1v7pC	200	34.38	c.62.1.1	108408
1ftrA	296	35.76	d.58.33.1,d.58.33.1	39485,39486
2ooiA	162	36.48		
2g1lA	104	37.32	b.26.1.2	134520
2i7fA	108	40.22		
2fafA	608	41.55		
2yxmA	100	42.83		
3cnvA	162	43.98		
1w2tA	432	46.44	b.29.1.19,b.67.2.3	120607,120608
2rp4A	76	48.17		
1m93C	41	50.20		
1tl9A	339	51.17	d.3.1.3	112505
1khbA	625	51.83	c.91.1.1,c.109.1.1	68606,68607
1pt6A	213	52.66	c.62.1.1	95091
2pgbB	259	53.45		
2cf8H	257	54.32		
1e0bA	68	54.66	b.34.13.2	37476
3ci0I	89	54.88		
1yloA	348	56.76	b.49.3.1,c.56.5.4	123659,123660
1vzqH	250	58.98		
2ac1A	541	59.56		
1wxcB	134	60.65		
2b9kA	47	60.98		
1gxjA	186	63.42	d.215.1.1	70707
3pcgA	200	66.21	b.3.6.1	22647
1yd0A	96	71.86		
2prbA	196	72.07		
2icuA	229	78.12		
1lq9A	112	78.47	d.58.4.3	78129
3b5lB	198	79.36		
2qf2A	624	80.38		
2oggA	152	81.63		
2q5cA	196	83.16		
1tqzA	133	83.25	b.55.1.11	119327
1t92A	116	83.74	d.24.1.3	112326
1k8kD	300	85.16	d.198.2.1,d.198.2.1	68309,68310
1zjkA	403	85.62	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2qzuA	491	89.22