# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	5.89e-09		
2yhx	457	6.745		
2fa1A	160	8.974	d.190.1.2	133182
2p3uA	52	14.61		
1yloA	348	17.02	b.49.3.1,c.56.5.4	123659,123660
2pr3B	51	17.60		
1yk3A	210	20.82	d.108.1.1	123493
2i79A	172	21.24		
2b9kA	47	21.38		
2yhxA	457	21.55	i.12.1.1	46024
2bz6L	53	23.51	g.3.11.1	129553
2rp4A	76	26.55		
2cnqA	306	28.20	d.143.1.1	130646
1obdA	306	29.06	d.143.1.1	86767
1z6eB	52	30.06	g.3.11.1	124519
1r17A	343	34.59	b.2.3.4,b.2.3.4	96796,96797
1ftrA	296	39.88	d.58.33.1,d.58.33.1	39485,39486
2dfzA	381	44.46		
3ci0I	89	46.84		
2it1A	362	51.33		
1k8kD	300	53.11	d.198.2.1,d.198.2.1	68309,68310
2bokL	55	53.87	g.3.11.1	128917
3buxB	329	55.62		
1u2eA	289	58.41		
1z47A	355	58.65		
1yvhA	329	59.47	a.39.1.7,a.48.1.1,d.93.1.1	124096,124097,124098
2qzuA	491	60.97		
2ve3A	444	63.98		
1atzA	189	64.26	c.62.1.1	34132
1vjuA	309	66.30	d.248.1.1	100835
1t4nA	94	68.57	d.50.1.1	106424
3pcgA	200	68.81	b.3.6.1	22647
2r6gF	514	73.24		
2zdiC	151	79.69		
1yd0A	96	79.92		
3bl4A	124	87.59		
2fb0A	94	88.39		
2d4qA	257	89.61		
1vi3A	170	89.97	b.17.1.2	100730