# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	7.46e-09		
1vjuA	309	22.84	d.248.1.1	100835
1r17A	343	34.82	b.2.3.4,b.2.3.4	96796,96797
2q3uA	383	35.53	d.126.1.6	139809
1vkpA	383	39.27	d.126.1.6	108686
1t4nA	94	40.16	d.50.1.1	106424
2yhx	457	43.77		
2ekcA	262	48.69		
2hcmA	164	49.80		
2cc6A	68	52.36	d.230.2.1	130218
3ci0I	89	53.57		
2r0bA	154	54.12		
2aexA	346	54.41		
2cz8A	69	60.38		
2esbA	188	63.03		
2nt2A	145	66.45		
2yrlA	102	71.00		
3bl4A	124	71.56		
1wrmA	165	73.14		
1ngnA	155	74.76	a.96.1.2	85697
2inpL	89	75.84		
2fa1A	160	77.73	d.190.1.2	133182
2dfzA	381	78.76		
2og2A	359	87.05		
1g4wR	383	87.76	a.24.11.1,c.45.1.2	16644,32692