# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	7.03e-10		
2fa1A	160	2.473	d.190.1.2	133182
1yk3A	210	7.082	d.108.1.1	123493
2yhx	457	8.399		
2i79A	172	8.982		
1r17A	343	13.13	b.2.3.4,b.2.3.4	96796,96797
2rp4A	76	21.77		
2bz6L	53	25.99	g.3.11.1	129553
2yhxA	457	28.39	i.12.1.1	46024
2p3uA	52	28.42		
1yloA	348	28.75	b.49.3.1,c.56.5.4	123659,123660
1atzA	189	32.14	c.62.1.1	34132
1yd0A	96	32.56		
2pr3B	51	34.34		
2qzuA	491	40.42		
3ci0I	89	42.59		
2d4qA	257	43.79		
1obdA	306	43.90	d.143.1.1	86767
1vi3A	170	45.71	b.17.1.2	100730
2cnqA	306	46.77	d.143.1.1	130646
2ooiA	162	50.77		
2p19A	149	51.43		
2b9kA	47	52.95		
3bl4A	124	57.86		
2prbA	196	60.14		
1t4nA	94	62.15	d.50.1.1	106424
2dfzA	381	63.89		
3cnvA	162	70.62		
1vjuA	309	73.64	d.248.1.1	100835
2aexA	346	74.63		
3buxB	329	75.29		
3pcgA	200	75.58	b.3.6.1	22647
1z6eB	52	77.90	g.3.11.1	124519
1pt6A	213	78.21	c.62.1.1	95091
2oggA	152	79.03		
1m93C	41	79.15		
1gxjA	186	83.57	d.215.1.1	70707
2bokL	55	85.94	g.3.11.1	128917
2d42A	249	85.98		
2i7fA	108	87.97		
1u2eA	289	89.24