# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bidA 64 5.37e-11 1pieA 419 0.3616 d.14.1.5,d.58.26.7 94706,94707 2yhx 457 4.121 1fs0E 138 4.905 a.2.10.1,b.93.1.1 59997,59998 2qjjA 402 5.320 2qgyA 391 6.356 1t92A 116 6.436 d.24.1.3 112326 1obdA 306 6.714 d.143.1.1 86767 1r17A 343 8.888 b.2.3.4,b.2.3.4 96796,96797 2yhxA 457 9.335 i.12.1.1 46024 2cnqA 306 11.25 d.143.1.1 130646 2i2cA 272 11.84 2dwcA 433 12.17 2qzuA 491 12.42 2dt4A 143 13.65 2eaqA 90 15.28 1yk3A 210 15.32 d.108.1.1 123493 1v7pC 200 15.41 c.62.1.1 108408 2vccA 891 16.28 1cl8A 276 16.62 c.52.1.1 33230 1yd0A 96 17.19 1i19A 561 17.98 d.58.32.3,d.145.1.1 61522,61523 1nycA 111 18.67 b.61.2.2 92336 1v9tA 166 19.06 b.62.1.1 108451 1lopA 164 19.35 b.62.1.1 27510 2p3uB 233 19.48 1q7eA 428 20.15 c.123.1.1 96035 1f7zA 233 20.57 b.47.1.2 59681 2i79A 172 20.87 2po1B 277 22.84 3bbjA 272 25.03 2cirA 297 28.19 1omrA 201 28.74 a.39.1.5 93349 1sqgA 429 29.86 a.79.1.3,c.66.1.38 105912,105913 1s5aA 150 30.42 d.17.4.10 98525 1f00I 282 31.03 b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 2o9cA 342 32.16 1zxmA 400 32.95 1vplA 256 33.72 c.37.1.12 113966 2b6dA 345 34.20 c.94.1.2 127985 2p6yA 142 35.13 2ho3A 325 35.22 2v0uA 146 35.58 2nqlA 388 36.04 2p52A 196 38.59 1rlr 761 38.77 1earA 147 42.50 b.107.1.1,d.58.38.1 64875,64876 2zdiC 151 42.52 2sfaA 191 42.78 b.47.1.1 25815 2bhvA 246 43.02 1lq9A 112 44.58 d.58.4.3 78129 2p7jA 287 44.81 1z2mA 155 45.57 d.15.1.1,d.15.1.1 124387,124388 2ys3A 137 46.46 2o5gA 148 47.88 2ghtA 181 48.00 2dkfA 431 49.79 1ac5A 483 52.00 c.69.1.5 34653 1j6wA 175 52.04 d.185.1.2 62663 1zdnA 158 52.23 d.20.1.1 124943 3bs1A 103 52.61 1uhnA 189 52.76 a.39.1.5 99399 2b9kA 47 53.06 1qwoA 442 53.23 c.60.1.2 104620 1ji1A 637 54.86 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1clc 639 55.34 2ot9A 180 56.37 2q4kA 251 57.97 d.86.1.2 139864 2nykA 285 58.16 2p3uA 52 60.11 1qfxA 460 61.09 c.60.1.2 33994 1dlcA 584 61.26 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 2euaA 431 61.43 d.161.1.1 132380 1jq5A 370 61.44 e.22.1.2 67084 1wdcB 156 62.85 a.39.1.5 17302 2qhkA 174 63.06 1atzA 189 63.22 c.62.1.1 34132 2pvuA 272 63.61 2efeA 267 68.74 1ojrA 274 68.99 c.74.1.1 93147 3caxA 369 69.84 2hx0A 154 70.50 d.290.1.3 136830 1gr0A 367 70.80 c.2.1.3,d.81.1.3 70379,70380 2rp4A 76 70.80 1clcA 639 71.31 a.102.1.2,b.1.18.2 18835,21872 2pujA 286 71.42 1g8iA 190 71.77 a.39.1.5 60363 2i44A 324 72.63 2pr3B 51 72.69 2a74A 643 74.28 1tr8A 102 74.75 3b98A 475 77.18 2q8pA 260 78.53 2o56A 407 83.02 1j7jA 178 83.94 c.61.1.1 84131 2rfmA 192 84.52 2hxdA 204 86.07 1dd9A 338 86.38 e.13.1.1 43254 2ghpA 292 86.57 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1dqeA 137 87.13 a.39.2.1 17388 1dgfA 497 87.95 e.5.1.1 42782 1or0B 528 88.16 2vgeA 229 89.69 1edg 380 89.82