# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	4.88e-09		
2fa1A	160	6.980	d.190.1.2	133182
2yhx	457	11.49		
1yk3A	210	12.82	d.108.1.1	123493
2i79A	172	19.32		
2p3uA	52	24.57		
1r17A	343	25.65	b.2.3.4,b.2.3.4	96796,96797
2rp4A	76	30.27		
2pr3B	51	30.47		
2bz6L	53	34.63	g.3.11.1	129553
2yhxA	457	35.40	i.12.1.1	46024
2qzuA	491	35.57		
1atzA	189	35.75	c.62.1.1	34132
2b9kA	47	36.91		
1yloA	348	50.42	b.49.3.1,c.56.5.4	123659,123660
3ci0I	89	50.54		
1vi3A	170	54.94	b.17.1.2	100730
2dfzA	381	54.96		
1z6eB	52	59.15	g.3.11.1	124519
1obdA	306	59.83	d.143.1.1	86767
2cnqA	306	61.36	d.143.1.1	130646
3pcgA	200	65.28	b.3.6.1	22647
1yd0A	96	66.02		
2bokL	55	68.44	g.3.11.1	128917
2icuA	229	85.41		
2it1A	362	86.95