# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	5.66e-09		
2fa1A	160	4.933	d.190.1.2	133182
2yhx	457	8.557		
2b9kA	47	15.27		
2rp4A	76	16.14		
1yk3A	210	17.09	d.108.1.1	123493
2p3uA	52	19.47		
2pr3B	51	21.16		
2bz6L	53	22.86	g.3.11.1	129553
2yhxA	457	26.95	i.12.1.1	46024
1r17A	343	38.25	b.2.3.4,b.2.3.4	96796,96797
1yloA	348	40.74	b.49.3.1,c.56.5.4	123659,123660
2i79A	172	42.28		
1u2eA	289	44.78		
1z6eB	52	49.36	g.3.11.1	124519
3ci0I	89	50.19		
2bokL	55	52.04	g.3.11.1	128917
3pcgA	200	52.11	b.3.6.1	22647
1t4nA	94	53.47	d.50.1.1	106424
2qzuA	491	53.75		
3buxB	329	55.67		
2dfzA	381	57.58		
1atzA	189	60.25	c.62.1.1	34132
1yvhA	329	60.56	a.39.1.7,a.48.1.1,d.93.1.1	124096,124097,124098
2it1A	362	61.58		
2d4qA	257	66.36		
1obdA	306	70.26	d.143.1.1	86767
2yrlA	102	70.83		
1f00I	282	78.19	b.1.14.1,b.1.14.1,d.169.1.3	22368,22369,42439
2cnqA	306	84.82	d.143.1.1	130646