# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.22e-08		
2fa1A	160	4.237	d.190.1.2	133182
2yhx	457	10.12		
1yk3A	210	11.35	d.108.1.1	123493
2p3uA	52	11.80		
2pr3B	51	13.91		
1r17A	343	19.16	b.2.3.4,b.2.3.4	96796,96797
1yloA	348	19.45	b.49.3.1,c.56.5.4	123659,123660
2i79A	172	19.52		
2b9kA	47	19.55		
2cnqA	306	22.94	d.143.1.1	130646
1obdA	306	24.01	d.143.1.1	86767
2bokL	55	25.06	g.3.11.1	128917
2bz6L	53	27.19	g.3.11.1	129553
1z6eB	52	27.71	g.3.11.1	124519
2yhxA	457	28.35	i.12.1.1	46024
2it1A	362	32.49		
2rp4A	76	35.13		
1atzA	189	47.46	c.62.1.1	34132
1nlqA	108	59.31	b.121.3.1	85853
1vplA	256	60.42	c.37.1.12	113966
2d42A	249	60.49		
3pcgA	200	64.39	b.3.6.1	22647
3ci0I	89	66.14		
3buxB	329	66.36		
1v7pC	200	66.38	c.62.1.1	108408
1izoA	417	67.14	a.104.1.1	83851
1yvhA	329	67.55	a.39.1.7,a.48.1.1,d.93.1.1	124096,124097,124098
1pt6A	213	70.03	c.62.1.1	95091
2ac1A	541	73.25		
1u2eA	289	76.72		
2qzuA	491	76.85		
1z47A	355	77.52		
1k8kD	300	77.59	d.198.2.1,d.198.2.1	68309,68310
1m93C	41	86.49