# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.22e-07		
2fa1A	160	6.845	d.190.1.2	133182
2yhx	457	8.844		
2p3uA	52	15.06		
2bz6L	53	17.62	g.3.11.1	129553
2pr3B	51	18.86		
2b9kA	47	18.90		
1yk3A	210	26.29	d.108.1.1	123493
1yloA	348	28.02	b.49.3.1,c.56.5.4	123659,123660
2yhxA	457	28.67	i.12.1.1	46024
1r17A	343	29.75	b.2.3.4,b.2.3.4	96796,96797
2rp4A	76	36.44		
1z6eB	52	36.63	g.3.11.1	124519
2bokL	55	40.52	g.3.11.1	128917
2qzuA	491	49.58		
2i79A	172	49.82		
1atzA	189	56.85	c.62.1.1	34132
2cnqA	306	60.40	d.143.1.1	130646
1obdA	306	68.19	d.143.1.1	86767
1v7pC	200	69.84	c.62.1.1	108408
2it1A	362	76.09		
3pcgA	200	76.48	b.3.6.1	22647
1h6fA	193	76.95	b.2.5.4	70901
1pt6A	213	77.80	c.62.1.1	95091
3ci0I	89	78.09		
1u2eA	289	85.52		
2i2cA	272	89.16