# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	9.73e-09		
2i79A	172	19.89		
2yhx	457	26.95		
1b77A	228	30.85	d.131.1.2,d.131.1.2	41362,41363
2fa1A	160	32.12	d.190.1.2	133182
2phzA	311	37.23		
4tsvA	150	37.47	b.22.1.1	23860
2ve3A	444	39.62		
1amx	180	56.07		
3bl4A	124	56.85		
2jm1A	141	66.71		
3ch3X	265	69.80		
1amxA	180	69.82	b.2.3.1	22410
1zcjA	463	71.02		
2j59M	168	71.11		
2prbA	196	72.07		
2yhxA	457	73.01	i.12.1.1	46024
1ngnA	155	73.58	a.96.1.2	85697
1je5A	206	73.98	b.40.4.7	62909
2d4qA	257	74.00		
1u2kA	309	74.15	a.93.1.3	112983
1wwhA	119	75.02	d.58.7.1	121358
2i7gA	376	78.74		
3ci0I	89	80.37		
1r17A	343	81.41	b.2.3.4,b.2.3.4	96796,96797
2og2A	359	81.68		
1v7pC	200	81.95	c.62.1.1	108408
2tnfA	156	88.56	b.22.1.1	23880
1pt6A	213	89.55	c.62.1.1	95091
1wj9A	211	89.84	d.58.53.1,d.58.53.1	114694,114695