# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.03e-06		
2i79A	172	12.78		
2fa1A	160	20.61	d.190.1.2	133182
3ci0I	89	38.80		
2yhx	457	41.76		
3pcgA	200	55.07	b.3.6.1	22647
2ve3A	444	60.47		
1amx	180	61.20		
1amxA	180	63.68	b.2.3.1	22410
1w2tA	432	64.81	b.29.1.19,b.67.2.3	120607,120608
2z10A	194	70.47		
1t4nA	94	72.46	d.50.1.1	106424
2bokL	55	82.08	g.3.11.1	128917
1nlqA	108	83.20	b.121.3.1	85853
2bz6L	53	84.14	g.3.11.1	129553
1x8vA	455	88.69	a.104.1.1	114968