# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	1.20e-05		
2j01Q	141	7.122		
2q3uA	383	7.312	d.126.1.6	139809
1vkpA	383	13.35	d.126.1.6	108686
1djrD	103	20.99	b.40.2.1	24865
1t4nA	94	22.03	d.50.1.1	106424
1vjuA	309	22.08	d.248.1.1	100835
2d7vA	162	24.81		
1srvA	145	30.73	c.8.5.1	30817
2aexA	346	32.87		
1y9wA	140	36.50	d.108.1.1	122783
1vqoH	171	36.52	d.41.4.1	120369
1qfxA	460	37.91	c.60.1.2	33994
1jj2H	167	38.94	d.41.4.1	63093
2fhxA	246	39.27		
3c19A	186	40.20		
1c0pA	363	40.25	c.4.1.2,d.16.1.3	30647,37934
1qqgA	264	40.31	b.55.1.2,b.55.1.2	26987,26988
2r6iA	284	41.65		
3chbD	104	41.98	b.40.2.1	24970
2ek6A	95	45.18		
1u9yA	284	45.21	c.61.1.2,c.61.1.2	119655,119656
2cuyA	305	48.74		
2hv2A	400	49.59		
1u69A	163	50.34	d.32.1.7	107699
2yztA	67	52.59		
1zb9A	143	52.83		
1jkeA	145	54.38	c.110.1.1	66791
1kid	203	61.13		
1pzxA	289	61.74	c.119.1.1	95484
2gx9A	129	62.44	d.299.1.1	135828
1lkdA	297	63.46	d.32.1.3,d.32.1.3	78059,78060
2ek1A	95	65.30		
2q0iA	303	65.48		
1vhsA	175	69.27	d.108.1.1	100698
1whsB	153	70.26		
3bl4A	124	70.26		
1kidA	203	70.31	c.8.5.1	30771
2qcuA	501	72.36		
2fwtA	125	72.57		
1qh5A	260	73.96	d.157.1.2	42057
1j7gA	144	74.18	c.110.1.1	84130
2fiwA	172	77.31	d.108.1.1	133539
1euvA	221	77.34	d.3.1.7	37133
1mgtA	174	78.04	a.4.2.1,c.55.7.1	16078,33753
1zosA	230	82.16		
2ez6A	221	86.09	a.149.1.1,d.50.1.1	132616,132617
2inpL	89	88.36		
1t4oA	117	89.32	d.50.1.1	106425