# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bidA	64	6.54e-11		
2rghA	571	2.174		
1gg1A	350	4.492	c.1.10.4	29187
1of8A	370	5.917	c.1.10.4	92819
1n8fA	350	16.45	c.1.10.4	85397
1wocA	103	16.89		
1fnsA	196	17.40	c.62.1.1	34136
1t4nA	94	18.46	d.50.1.1	106424
1fsuA	492	20.82	c.76.1.2	35032
2qztA	111	23.98		
1yd0A	96	30.78		
2b9kA	47	31.04		
2a8eA	220	31.41	d.296.1.1	126397
2gz6A	388	34.49		
1tk1A	260	35.14	d.248.1.1	107066
2p3uA	52	35.93		
1h9oA	112	36.69	d.93.1.1	60837
1kwmA	402	36.87	c.56.5.1,d.58.3.1	73079,73080
3ci0I	89	37.20		
2pr3B	51	40.46		
1ijbA	202	44.01	c.62.1.1	71229
1nlqA	108	46.33	b.121.3.1	85853
1t4oA	117	47.52	d.50.1.1	106425
2fa1A	160	52.28	d.190.1.2	133182
1fjsL	52	57.66	g.3.11.1	44226
2fafA	608	58.33		
1z6eB	52	59.27	g.3.11.1	124519
1tr7A	164	60.92	b.2.3.2	119328
2nqlA	388	63.39		
2iccA	119	63.81		
1zn6A	227	65.56	d.303.1.1	125373
1gxjA	186	65.80	d.215.1.1	70707
3b5lB	198	65.93		
2z5aB	420	66.08		
1k5jA	124	66.25	b.121.3.1	68201
2bbeA	108	66.44		
2q8pA	260	68.03		
2rp4A	76	68.96		
2bz6L	53	70.62	g.3.11.1	129553
2f20A	240	72.39	d.303.1.1	132791
1txnA	328	72.93	d.248.1.1	112779
2p5qA	170	73.62		
1x7vA	99	74.49	d.58.4.11	109501
2prbA	196	74.55		
2qmlA	198	75.72		
2icuA	229	77.38		
1wxcB	134	78.22		
1pt6A	213	80.29	c.62.1.1	95091
2ot9A	180	80.97		
2bhvA	246	82.34